c2eae1000b4eef5e1b6ca32a5fe0fe0813a04182
gperez2
  Fri Oct 24 16:36:00 2025 -0700
Upadating the hg38 knownGene alpha.ra V48 to V49, refs #36169

diff --git src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra
index c9de593f762..e1bddb9ca62 100644
--- src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra
+++ src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra
@@ -1,36 +1,36 @@
 track knownGene
 table knownGene
-shortLabel GENCODE V48
-longLabel GENCODE V48
+shortLabel GENCODE V49
+longLabel GENCODE V49
 #parent knownGeneArchive
 priority 1
 #priority 5
 visibility pack
 type bigGenePred knownGenePep knownGeneMrna
-bigDataUrl /gbdb/hg38/gencode/gencodeV48.bb
+bigDataUrl /gbdb/hg38/gencode/gencodeV49.bb
 downloadUrl.1 "GFF Format" https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/genes/hg38.knownGene.gtf.gz
 baseColorDefault genomicCodons
 group genes
 isGencode3 on
 directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s
 labelFields geneName,name,geneName2,name2
 defaultLabelFields geneName
 itemRgb on
-#externalDb knownGeneV48
+#externalDb knownGeneV49
 maxItems 50000
-html knownGeneV48
+html knownGeneV49
 searchIndex name
 idXref kgAlias kgID alias
 intronGap 12
 defaultLinkedTables kgXref
 squishyPackPoint 1
 squishyPackField rank
 squishyPackLabel Number of transcripts shown at full height (ranked by <A href="#squishyPack">GENCODE transcript ranking</A>)
 
 searchName knownGeneAcc
 searchTable knownGene
 searchMethod exact
 searchType knownGene
 shortCircuit 1
 semiShortCircuit 1
 termRegex ENST[0-9.]+
@@ -42,19 +42,19 @@
 #longLabel Previous Version of UCSC Genes
 #group genes
 #visibility hide
 #color 82,82,160
 #type genePred
 #hgsid on
 #oldToNew kgV45ToKgV46
 #baseColorUseCds given
 #baseColorDefault genomicCodons
 
 searchName knownGeneFast
 searchTable knownGene
 searchType knownGeneFast
 shortCircuit 1
 searchPriority 1001
-searchTrix /gbdb/hg38/knownGeneFastV48.ix
+searchTrix /gbdb/hg38/knownGeneFastV49.ix
 searchTrixContext on
 doPage 1