a6cc2c4bb7c8794478931fcb160d67b55e539408
gperez2
Fri May 30 16:46:34 2025 -0700
Removing the knownGeneV47 alpha release tag in the knownGeneArchive track, refs #35186
diff --git src/hg/makeDb/trackDb/human/hg38/knownGeneArchive.ra src/hg/makeDb/trackDb/human/hg38/knownGeneArchive.ra
index ae7aa743fe9..b8da1cfdf10 100644
--- src/hg/makeDb/trackDb/human/hg38/knownGeneArchive.ra
+++ src/hg/makeDb/trackDb/human/hg38/knownGeneArchive.ra
@@ -1,220 +1,219 @@
track knownGeneArchive
superTrack on
shortLabel GENCODE Archive
longLabel GENCODE Archive
group genes
type bed 6 +
html ../../knownGeneArchive
track knownGeneV36
#table knownGene
shortLabel GENCODE V36
longLabel GENCODE V36
parent knownGeneArchive
priority 8
visibility hide
type bigGenePred
bigDataUrl /gbdb/hg38/gencode/gencodeV36.bb
baseColorDefault genomicCodons
group genes
isGencode3 on
directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s
labelFields geneName,name,geneName2,name2
defaultLabelFields geneName
itemRgb on
externalDb knownGeneV36
maxItems 50000
html knownGeneV36
searchIndex name
idXref kgAlias kgID alias
intronGap 12
defaultLinkedTables kgXref
track knownGeneV38
#table knownGene
shortLabel GENCODE V38
longLabel GENCODE V38
parent knownGeneArchive
priority 7
visibility hide
type bigGenePred
bigDataUrl /gbdb/hg38/gencode/gencodeV38.bb
baseColorDefault genomicCodons
group genes
isGencode3 on
directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s
labelFields geneName,name,geneName2,name2
defaultLabelFields geneName
itemRgb on
externalDb knownGeneV38
maxItems 50000
html knownGeneV38
searchIndex name
idXref kgAlias kgID alias
intronGap 12
defaultLinkedTables kgXref
track knownGeneV39
#table knownGene
shortLabel GENCODE V39
longLabel GENCODE V39
parent knownGeneArchive
priority 6
visibility hide
type bigGenePred
bigDataUrl /gbdb/hg38/gencode/gencodeV39.bb
baseColorDefault genomicCodons
group genes
isGencode3 on
directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s
labelFields geneName,name,geneName2,name2
defaultLabelFields geneName
itemRgb on
externalDb knownGeneV39
maxItems 50000
html knownGeneV39
searchIndex name
idXref kgAlias kgID alias
intronGap 12
defaultLinkedTables kgXref
track knownGeneV43
#table knownGene
shortLabel GENCODE V43
longLabel GENCODE V43
parent knownGeneArchive
priority 5
visibility hide
type bigGenePred
bigDataUrl /gbdb/hg38/gencode/gencodeV43.bb
baseColorDefault genomicCodons
group genes
isGencode3 on
directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s
labelFields geneName,name,geneName2,name2
defaultLabelFields geneName
itemRgb on
externalDb knownGeneV43
maxItems 50000
html knownGeneV43
searchIndex name
idXref kgAlias kgID alias
intronGap 12
defaultLinkedTables kgXref
squishyPackPoint 2
squishyPackField rank
track knownGeneV44
#table knownGene
shortLabel GENCODE V44
longLabel GENCODE V44
parent knownGeneArchive
priority 4
visibility hide
type bigGenePred knownGenePep knownGeneMrna
bigDataUrl /gbdb/hg38/gencode/gencodeV44.bb
#downloadUrl.1 "GFF Format" https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/genes/hg38.knownGene.gtf.gz
baseColorDefault genomicCodons
group genes
isGencode3 on
directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s
labelFields geneName,name,geneName2,name2
defaultLabelFields geneName
itemRgb on
externalDb knownGeneV44
maxItems 50000
html knownGeneV44
searchIndex name
idXref kgAlias kgID alias
intronGap 12
defaultLinkedTables kgXref
squishyPackPoint 1
squishyPackField rank
squishyPackLabel Number of transcripts shown at full height (ranked by GENCODE transcript ranking)
track knownGeneV45
#table knownGene
shortLabel GENCODE V45
longLabel GENCODE V45
parent knownGeneArchive
priority 3
visibility pack
type bigGenePred knownGenePep knownGeneMrna
bigDataUrl /gbdb/hg38/gencode/gencodeV45.bb
#downloadUrl.1 "GFF Format" https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/genes/hg38.knownGene.gtf.gz
baseColorDefault genomicCodons
group genes
isGencode3 on
directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s
labelFields geneName,name,geneName2,name2
defaultLabelFields geneName
itemRgb on
externalDb knownGeneV45
maxItems 50000
html knownGeneV45
searchIndex name
idXref kgAlias kgID alias
intronGap 12
defaultLinkedTables kgXref
squishyPackPoint 1
squishyPackField rank
squishyPackLabel Number of transcripts shown at full height (ranked by GENCODE transcript ranking)
track knownGeneV46
#table knownGene
shortLabel GENCODE V46
longLabel GENCODE V46
parent knownGeneArchive
priority 2
visibility pack
type bigGenePred knownGenePep knownGeneMrna
bigDataUrl /gbdb/hg38/gencode/gencodeV46.bb
#downloadUrl.1 "GFF Format" https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/genes/hg38.knownGene.gtf.gz
baseColorDefault genomicCodons
group genes
isGencode3 on
directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s
labelFields geneName,name,geneName2,name2
defaultLabelFields geneName
itemRgb on
externalDb knownGeneV46
maxItems 50000
html knownGeneV46
searchIndex name
idXref kgAlias kgID alias
intronGap 12
defaultLinkedTables kgXref
squishyPackPoint 1
squishyPackField rank
squishyPackLabel Number of transcripts shown at full height (ranked by GENCODE transcript ranking)
track knownGeneV47
- release alpha
#table knownGene
shortLabel GENCODE V47
longLabel GENCODE V47
parent knownGeneArchive
priority 1.9
visibility pack
type bigGenePred knownGenePep knownGeneMrna
bigDataUrl /gbdb/hg38/gencode/gencodeV47.bb
#downloadUrl.1 "GFF Format" https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/genes/hg38.knownGene.gtf.gz
baseColorDefault genomicCodons
group genes
isGencode3 on
directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s
labelFields geneName,name,geneName2,name2
defaultLabelFields geneName
itemRgb on
externalDb knownGeneV47
maxItems 50000
html knownGeneV47
searchIndex name
idXref kgAlias kgID alias
intronGap 12
defaultLinkedTables kgXref
squishyPackPoint 1
squishyPackField rank
squishyPackLabel Number of transcripts shown at full height (ranked by GENCODE transcript ranking)