33fc0fcf55670ce8eeb9f403583ba8fdc7bb5e01
gperez2
  Thu May 29 17:14:12 2025 -0700
Updates to the pseudogenes track, refs #35466

diff --git src/hg/makeDb/trackDb/human/hg38/pseudogenes.ra src/hg/makeDb/trackDb/human/hg38/pseudogenes.ra
index d68fd9155b4..c28dab0c459 100644
--- src/hg/makeDb/trackDb/human/hg38/pseudogenes.ra
+++ src/hg/makeDb/trackDb/human/hg38/pseudogenes.ra
@@ -1,55 +1,56 @@
 # pseudogene and parent tracks from Yale PseudoPipe (Jeltje, Jan 2025)
 
 track pseudogenes
 shortLabel Pseudogenes
 longLabel Pseudogenes and Parents
 group genes
 visibility hide
 type bigbed
 compositeTrack on
 noScoreFilter on
 pennantIcon New red ../goldenPath/newsarch.html#033125 "Released Mar. 31, 2025"
+html pseudogenes.html
 
         track yale_pseudogenes
         shortLabel Pseudogenes
         longLabel Yale Pseudogenes
         type bigBed 12 +
 	bigDataUrl /gbdb/hg38/pseudogenes/pseudoPipePgenes.bb
         visibility pack
         itemRgb on
-        labelFields hugo
-        defaultLabelFields hugo
-        searchIndex hugo,name,ppgene
+        labelFields pgenehugo
+        defaultLabelFields pgenehugo
+        searchIndex pgenehugo,name,parenthugo,ppgene,pptx,pensgene,penstx,ensgene,_enstx,ensprot
 	searchTrix /gbdb/hg38/pseudogenes/pseudoPipePgenes.ix
         labelSeparator " "
         html pseudogenes.html
-        mouseOver <b>PseudoPipe ID</b>: ${ppgene} <br> <b>Parent Ensembl gene ID</b>: ${geneParent} <br>  <b>Pseudogene type</b>: ${pgeneType}
+        mouseOver  <b>Pseudogene type</b>: ${pgeneType} <br> <b>Parent gene ID</b>: ${parenthugo} <br> <b>Parent transcript ID</b>: ${enstxurl}
         parent pseudogenes
         priority 2
 
         track yale_parents
         shortLabel Pseudogene Parents
         longLabel Yale Pseudogene Parents
         type bigBed 9 +
 	bigDataUrl /gbdb/hg38/pseudogenes/pseudoPipeParents.bb
         visibility pack
         itemRgb on
         labelFields hugo
         searchIndex hugo,name
 	searchTrix /gbdb/hg38/pseudogenes/pseudoPipeParents.ix
         labelSeparator " "
         html pseudogenes.html
-        mouseOver ${url}
+        mouseOver <b>Gene type</b>: ${geneType} <br> <b> ID</b>: ${name} <br> <b>Pseudogene position</b>: ${url}
         parent pseudogenes
         skipEmptyFields on
         priority 1
 
 searchName yale_pseudogenes
 searchTable yale_pseudogenes
 searchType bigBed
 searchPriority 27.01
 
 searchName yale_parents 
 searchTable yale_parents 
 searchType bigBed
 searchPriority 27.02