29b2ebed5a2d7069b1abe68a3abcb44565b4dd90
gperez2
  Thu Jun 11 16:47:58 2026 -0700
Releasing ENCODE4 Regulation tracks to the RR. Set the supertrack to hide by default and updated the pennantIcon to only New red. refs #34923

diff --git src/hg/makeDb/trackDb/mouse/mm10/encode4Reg.ra src/hg/makeDb/trackDb/mouse/mm10/encode4Reg.ra
index f87bd49efad..113ab9d5a25 100644
--- src/hg/makeDb/trackDb/mouse/mm10/encode4Reg.ra
+++ src/hg/makeDb/trackDb/mouse/mm10/encode4Reg.ra
@@ -1,1230 +1,1230 @@
 # ENCODE4 Integrated Regulation Track
 
 track encode4Reg
-superTrack on show
+superTrack on hide
 shortLabel ENCODE4 Regulation
 longLabel Integrated Regulation from ENCODE 4
 group regulation
 priority 0.5
-pennantIcon New red ../goldenPath/newsarch.html#TBD "Released TBD"
+pennantIcon New red
 html encode4Reg.html
 
     track encode4RegMarkH3k27ac
     container multiWig
     noInherit on
     type bigWig
     superTrack encode4Reg full
     shortLabel H3K27ac (Layered)
     longLabel H3K27ac signal marking active enhancers and promoters, averaged by organ/tissue
     visibility full
     viewLimits 0:100
     autoScale on
     maxHeightPixels 100:50:11
     aggregate transparentOverlay
     showSubtrackColorOnUi on
     priority 1.4
     dragAndDrop subtracks
     allButtonPair on
     html encode4RegMarkH3k27ac.html
 
         track encode4RegMarkH3k27acAdipose
         type bigWig
         shortLabel Adipose
         longLabel H3K27ac level of 1 adipose experiment (tissues and primary cells only)
         color 255,119,39
         parent encode4RegMarkH3k27ac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/adiposeH3K27ac.bw
         priority 1
 
         track encode4RegMarkH3k27acBoneMarrow
         type bigWig
         shortLabel Bone marrow
         longLabel Avg. H3K27ac level of 2 bone marrow experiments (tissues and primary cells only)
         color 184,120,120
         parent encode4RegMarkH3k27ac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/boneMarrowH3K27ac.bw
         priority 2
 
         track encode4RegMarkH3k27acBrain
         type bigWig
         shortLabel Brain
         longLabel Avg. H3K27ac level of 27 brain experiments (tissues and primary cells only)
         color 155,155,18
         parent encode4RegMarkH3k27ac
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/brainH3K27ac.bw
         priority 3
 
         track encode4RegMarkH3k27acConnectiveTissue
         type bigWig
         shortLabel Connective tissue
         longLabel H3K27ac level of 1 connective tissue experiment (tissues and primary cells only)
         color 138,135,169
         parent encode4RegMarkH3k27ac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/connectiveTissueH3K27ac.bw
         priority 4
 
         track encode4RegMarkH3k27acEmbryo
         type bigWig
         shortLabel Embryo
         longLabel Avg. H3K27ac level of 6 embryo experiments (tissues and primary cells only)
         color 118,158,101
         parent encode4RegMarkH3k27ac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/embryoH3K27ac.bw
         priority 5
 
         track encode4RegMarkH3k27acEpithelium
         type bigWig
         shortLabel Epithelium
         longLabel Avg. H3K27ac level of 5 epithelium experiments (tissues and primary cells only)
         color 221,126,107
         parent encode4RegMarkH3k27ac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/epitheliumH3K27ac.bw
         priority 6
 
         track encode4RegMarkH3k27acHeart
         type bigWig
         shortLabel Heart
         longLabel Avg. H3K27ac level of 10 heart experiments (tissues and primary cells only)
         color 116,50,165
         parent encode4RegMarkH3k27ac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/heartH3K27ac.bw
         priority 7
 
         track encode4RegMarkH3k27acIntestine
         type bigWig
         shortLabel Intestine
         longLabel Avg. H3K27ac level of 4 intestine experiments (tissues and primary cells only)
         color 121,92,166
         parent encode4RegMarkH3k27ac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/intestineH3K27ac.bw
         priority 8
 
         track encode4RegMarkH3k27acKidney
         type bigWig
         shortLabel Kidney
         longLabel Avg. H3K27ac level of 5 kidney experiments (tissues and primary cells only)
         color 92,161,153
         parent encode4RegMarkH3k27ac
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/kidneyH3K27ac.bw
         priority 9
 
         track encode4RegMarkH3k27acLimb
         type bigWig
         shortLabel Limb
         longLabel Avg. H3K27ac level of 6 limb experiments (tissues and primary cells only)
         color 95,88,237
         parent encode4RegMarkH3k27ac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/limbH3K27ac.bw
         priority 10
 
         track encode4RegMarkH3k27acLiver
         type bigWig
         shortLabel Liver
         longLabel Avg. H3K27ac level of 9 liver experiments (tissues and primary cells only)
         color 137,152,82
         parent encode4RegMarkH3k27ac
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/liverH3K27ac.bw
         priority 11
 
         track encode4RegMarkH3k27acLung
         type bigWig
         shortLabel Lung
         longLabel Avg. H3K27ac level of 4 lung experiments (tissues and primary cells only)
         color 130,163,45
         parent encode4RegMarkH3k27ac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/lungH3K27ac.bw
         priority 12
 
         track encode4RegMarkH3k27acPlacenta
         type bigWig
         shortLabel Placenta
         longLabel H3K27ac level of 1 placenta experiment (tissues and primary cells only)
         color 104,171,71
         parent encode4RegMarkH3k27ac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/placentaH3K27ac.bw
         priority 13
 
         track encode4RegMarkH3k27acSmallIntestine
         type bigWig
         shortLabel Small intestine
         longLabel H3K27ac level of 1 small intestine experiment (tissues and primary cells only)
         color 98,98,41
         parent encode4RegMarkH3k27ac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/smallIntestineH3K27ac.bw
         priority 14
 
         track encode4RegMarkH3k27acSpleen
         type bigWig
         shortLabel Spleen
         longLabel H3K27ac level of 1 spleen experiment (tissues and primary cells only)
         color 136,157,97
         parent encode4RegMarkH3k27ac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/spleenH3K27ac.bw
         priority 15
 
         track encode4RegMarkH3k27acStomach
         type bigWig
         shortLabel Stomach
         longLabel Avg. H3K27ac level of 4 stomach experiments (tissues and primary cells only)
         color 145,144,99
         parent encode4RegMarkH3k27ac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/stomachH3K27ac.bw
         priority 16
 
         track encode4RegMarkH3k27acTestis
         type bigWig
         shortLabel Testis
         longLabel H3K27ac level of 1 testis experiment (tissues and primary cells only)
         color 139,140,140
         parent encode4RegMarkH3k27ac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/testisH3K27ac.bw
         priority 17
 
         track encode4RegMarkH3k27acThymus
         type bigWig
         shortLabel Thymus
         longLabel H3K27ac level of 1 thymus experiment (tissues and primary cells only)
         color 142,124,195
         parent encode4RegMarkH3k27ac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/thymusH3K27ac.bw
         priority 18
 
         track encode4RegMarkH3k27acAllBlood
         type bigWig
         shortLabel Blood (all biosamples)
         longLabel H3K27ac level of 1 blood experiment (all biosamples)
         color 254,75,173
         parent encode4RegMarkH3k27ac
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/bloodH3K27acAll.bw
         priority 19
 
         track encode4RegMarkH3k27acAllEmbryo
         type bigWig
         shortLabel Embryo (all biosamples)
         longLabel Avg. H3K27ac level of 8 embryo experiments (all biosamples)
         color 118,158,101
         parent encode4RegMarkH3k27ac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/embryoH3K27acAll.bw
         priority 20
 
         track encode4RegMarkH3k27acAllSpleen
         type bigWig
         shortLabel Spleen (all biosamples)
         longLabel Avg. H3K27ac level of 2 spleen experiments (all biosamples)
         color 136,157,97
         parent encode4RegMarkH3k27ac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/spleenH3K27acAll.bw
         priority 21
 
     track encode4RegDnase
     container multiWig
     noInherit on
     type bigWig
     superTrack encode4Reg hide
     shortLabel DNase (Layered)
     longLabel Chromatin accessibility from DNase-seq signal, averaged by organ/tissue
     visibility hide
     viewLimits 0:50
     autoScale on
     maxHeightPixels 100:50:11
     aggregate transparentOverlay
     showSubtrackColorOnUi on
     priority 1.1
     dragAndDrop subtracks
     allButtonPair on
     html encode4RegDnase.html
 
         track encode4RegDnaseAdipose
         type bigWig
         shortLabel Adipose
         longLabel Avg. DNase level of 2 adipose experiments (tissues and primary cells only)
         color 255,119,39
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/adiposeDNase.bw
         priority 1
 
         track encode4RegDnaseAdrenalGland
         type bigWig
         shortLabel Adrenal gland
         longLabel Avg. DNase level of 14 adrenal gland experiments (tissues and primary cells only)
         color 90,179,68
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/adrenalGlandDNase.bw
         priority 2
 
         track encode4RegDnaseBlood
         type bigWig
         shortLabel Blood
         longLabel Avg. DNase level of 6 blood experiments (tissues and primary cells only)
         color 254,75,173
         parent encode4RegDnase
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/bloodDNase.bw
         priority 3
 
         track encode4RegDnaseBloodMarrow
         type bigWig
         shortLabel Blood marrow
         longLabel Avg. DNase level of 5 blood marrow experiments (tissues and primary cells only)
         color 184,120,120
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/bloodMarrowDNase.bw
         priority 4
 
         track encode4RegDnaseBrain
         type bigWig
         shortLabel Brain
         longLabel Avg. DNase level of 78 brain experiments (tissues and primary cells only)
         color 155,155,18
         parent encode4RegDnase
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/brainDNase.bw
         priority 5
 
         track encode4RegDnaseConnectiveTissue
         type bigWig
         shortLabel Connective tissue
         longLabel Avg. DNase level of 5 connective tissue experiments (tissues and primary cells only)
         color 138,135,169
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/connectiveTissueDNase.bw
         priority 6
 
         track encode4RegDnaseEmbryo
         type bigWig
         shortLabel Embryo
         longLabel Avg. DNase level of 11 embryo experiments (tissues and primary cells only)
         color 118,158,101
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/embryoDNase.bw
         priority 7
 
         track encode4RegDnaseEpithelium
         type bigWig
         shortLabel Epithelium
         longLabel Avg. DNase level of 3 epithelium experiments (tissues and primary cells only)
         color 221,126,107
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/epitheliumDNase.bw
         priority 8
 
         track encode4RegDnaseEye
         type bigWig
         shortLabel Eye
         longLabel Avg. DNase level of 5 eye experiments (tissues and primary cells only)
         color 163,127,144
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/eyeDNase.bw
         priority 9
 
         track encode4RegDnaseHeart
         type bigWig
         shortLabel Heart
         longLabel Avg. DNase level of 17 heart experiments (tissues and primary cells only)
         color 116,50,165
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/heartDNase.bw
         priority 10
 
         track encode4RegDnaseIntestine
         type bigWig
         shortLabel Intestine
         longLabel DNase level of 1 intestine experiment (tissues and primary cells only)
         color 121,92,166
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/intestineDNase.bw
         priority 11
 
         track encode4RegDnaseKidney
         type bigWig
         shortLabel Kidney
         longLabel Avg. DNase level of 17 kidney experiments (tissues and primary cells only)
         color 92,161,153
         parent encode4RegDnase
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/kidneyDNase.bw
         priority 12
 
         track encode4RegDnaseLargeIntestine
         type bigWig
         shortLabel Large intestine
         longLabel DNase level of 1 large intestine experiment (tissues and primary cells only)
         color 86,86,36
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/largeIntestineDNase.bw
         priority 13
 
         track encode4RegDnaseLimb
         type bigWig
         shortLabel Limb
         longLabel Avg. DNase level of 3 limb experiments (tissues and primary cells only)
         color 95,88,237
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/limbDNase.bw
         priority 14
 
         track encode4RegDnaseLiver
         type bigWig
         shortLabel Liver
         longLabel Avg. DNase level of 13 liver experiments (tissues and primary cells only)
         color 137,152,82
         parent encode4RegDnase
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/liverDNase.bw
         priority 15
 
         track encode4RegDnaseLung
         type bigWig
         shortLabel Lung
         longLabel Avg. DNase level of 16 lung experiments (tissues and primary cells only)
         color 130,163,45
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/lungDNase.bw
         priority 16
 
         track encode4RegDnaseMuscle
         type bigWig
         shortLabel Muscle
         longLabel Avg. DNase level of 16 muscle experiments (tissues and primary cells only)
         color 137,135,170
         parent encode4RegDnase
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/muscleDNase.bw
         priority 17
 
         track encode4RegDnaseOvary
         type bigWig
         shortLabel Ovary
         longLabel Avg. DNase level of 4 ovary experiments (tissues and primary cells only)
         color 161,126,151
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/ovaryDNase.bw
         priority 18
 
         track encode4RegDnaseSpleen
         type bigWig
         shortLabel Spleen
         longLabel Avg. DNase level of 12 spleen experiments (tissues and primary cells only)
         color 136,157,97
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/spleenDNase.bw
         priority 19
 
         track encode4RegDnaseStomach
         type bigWig
         shortLabel Stomach
         longLabel DNase level of 1 stomach experiment (tissues and primary cells only)
         color 145,144,99
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/stomachDNase.bw
         priority 20
 
         track encode4RegDnaseTestis
         type bigWig
         shortLabel Testis
         longLabel Avg. DNase level of 2 testis experiments (tissues and primary cells only)
         color 139,140,140
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/testisDNase.bw
         priority 21
 
         track encode4RegDnaseThymus
         type bigWig
         shortLabel Thymus
         longLabel Avg. DNase level of 15 thymus experiments (tissues and primary cells only)
         color 142,124,195
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/thymusDNase.bw
         priority 22
 
         track encode4RegDnaseUrinaryBladder
         type bigWig
         shortLabel Urinary bladder
         longLabel Avg. DNase level of 10 urinary bladder experiments (tissues and primary cells only)
         color 194,33,39
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/urinaryBladderDNase.bw
         priority 23
 
         track encode4RegDnaseAllBlood
         type bigWig
         shortLabel Blood (all biosamples)
         longLabel Avg. DNase level of 8 blood experiments (all biosamples)
         color 254,75,173
         parent encode4RegDnase
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/bloodDNaseAll.bw
         priority 24
 
         track encode4RegDnaseAllBoneMarrow
         type bigWig
         shortLabel Bone marrow (all biosamples)
         longLabel Avg. DNase level of 3 bone marrow experiments (all biosamples)
         color 184,120,120
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/boneMarrowDNaseAll.bw
         priority 25
 
         track encode4RegDnaseAllBreast
         type bigWig
         shortLabel Breast (all biosamples)
         longLabel DNase level of 1 breast experiment (all biosamples)
         color 65,171,173
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/breastDNaseAll.bw
         priority 26
 
         track encode4RegDnaseAllEmbryo
         type bigWig
         shortLabel Embryo (all biosamples)
         longLabel Avg. DNase level of 22 embryo experiments (all biosamples)
         color 118,158,101
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/embryoDNaseAll.bw
         priority 27
 
         track encode4RegDnaseAllSpinalCord
         type bigWig
         shortLabel Spinal cord (all biosamples)
         longLabel Avg. DNase level of 2 spinal cord experiments (all biosamples)
         color 130,141,158
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/spinalCordDNaseAll.bw
         priority 28
 
         track encode4RegDnaseAllSpleen
         type bigWig
         shortLabel Spleen (all biosamples)
         longLabel Avg. DNase level of 15 spleen experiments (all biosamples)
         color 136,157,97
         parent encode4RegDnase off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/spleenDNaseAll.bw
         priority 29
 
     track encode4RegAtac
     container multiWig
     noInherit on
     type bigWig
     superTrack encode4Reg hide
     shortLabel ATAC (Layered)
     longLabel Chromatin accessibility from ATAC-seq signal, averaged by organ/tissue
     visibility hide
     viewLimits 0:50
     autoScale on
     maxHeightPixels 100:50:11
     aggregate transparentOverlay
     showSubtrackColorOnUi on
     priority 1.2
     dragAndDrop subtracks
     allButtonPair on
     html encode4RegAtac.html
 
         track encode4RegAtacBlood
         type bigWig
         shortLabel Blood
         longLabel Avg. ATAC level of 4 blood experiments (tissues and primary cells only)
         color 254,75,173
         parent encode4RegAtac
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/bloodATAC.bw
         priority 1
 
         track encode4RegAtacBoneMarrow
         type bigWig
         shortLabel Bone marrow
         longLabel Avg. ATAC level of 7 bone marrow experiments (tissues and primary cells only)
         color 184,120,120
         parent encode4RegAtac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/boneMarrowATAC.bw
         priority 2
 
         track encode4RegAtacBrain
         type bigWig
         shortLabel Brain
         longLabel Avg. ATAC level of 23 brain experiments (tissues and primary cells only)
         color 155,155,18
         parent encode4RegAtac
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/brainATAC.bw
         priority 3
 
         track encode4RegAtacEmbryo
         type bigWig
         shortLabel Embryo
         longLabel Avg. ATAC level of 5 embryo experiments (tissues and primary cells only)
         color 118,158,101
         parent encode4RegAtac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/embryoATAC.bw
         priority 4
 
         track encode4RegAtacEpithelium
         type bigWig
         shortLabel Epithelium
         longLabel Avg. ATAC level of 5 epithelium experiments (tissues and primary cells only)
         color 221,126,107
         parent encode4RegAtac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/epitheliumATAC.bw
         priority 5
 
         track encode4RegAtacHeart
         type bigWig
         shortLabel Heart
         longLabel Avg. ATAC level of 7 heart experiments (tissues and primary cells only)
         color 116,50,165
         parent encode4RegAtac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/heartATAC.bw
         priority 6
 
         track encode4RegAtacIntestine
         type bigWig
         shortLabel Intestine
         longLabel Avg. ATAC level of 4 intestine experiments (tissues and primary cells only)
         color 121,92,166
         parent encode4RegAtac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/intestineATAC.bw
         priority 7
 
         track encode4RegAtacKidney
         type bigWig
         shortLabel Kidney
         longLabel Avg. ATAC level of 4 kidney experiments (tissues and primary cells only)
         color 92,161,153
         parent encode4RegAtac
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/kidneyATAC.bw
         priority 8
 
         track encode4RegAtacLimb
         type bigWig
         shortLabel Limb
         longLabel Avg. ATAC level of 5 limb experiments (tissues and primary cells only)
         color 95,88,237
         parent encode4RegAtac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/limbATAC.bw
         priority 9
 
         track encode4RegAtacLiver
         type bigWig
         shortLabel Liver
         longLabel Avg. ATAC level of 7 liver experiments (tissues and primary cells only)
         color 137,152,82
         parent encode4RegAtac
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/liverATAC.bw
         priority 10
 
         track encode4RegAtacLung
         type bigWig
         shortLabel Lung
         longLabel Avg. ATAC level of 4 lung experiments (tissues and primary cells only)
         color 130,163,45
         parent encode4RegAtac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/lungATAC.bw
         priority 11
 
         track encode4RegAtacStomach
         type bigWig
         shortLabel Stomach
         longLabel Avg. ATAC level of 4 stomach experiments (tissues and primary cells only)
         color 145,144,99
         parent encode4RegAtac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/stomachATAC.bw
         priority 12
 
         track encode4RegAtacAllEmbryo
         type bigWig
         shortLabel Embryo (all biosamples)
         longLabel Avg. ATAC level of 7 embryo experiments (all biosamples)
         color 118,158,101
         parent encode4RegAtac off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/embryoATACAll.bw
         priority 13
 
     track encode4RegMarkH3k4me3
     container multiWig
     noInherit on
     type bigWig
     superTrack encode4Reg hide
     shortLabel H3K4me3 (Layered)
     longLabel H3K4me3 signal marking active and poised promoters, averaged by organ/tissue
     visibility hide
     viewLimits 0:100
     autoScale on
     maxHeightPixels 100:50:11
     aggregate transparentOverlay
     showSubtrackColorOnUi on
     priority 1.3
     dragAndDrop subtracks
     allButtonPair on
     html encode4RegMarkH3k4me3.html
 
         track encode4RegMarkH3k4me3Adipose
         type bigWig
         shortLabel Adipose
         longLabel H3K4me3 level of 1 adipose experiment (tissues and primary cells only)
         color 255,119,39
         parent encode4RegMarkH3k4me3 off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/adiposeH3K4me3.bw
         priority 1
 
         track encode4RegMarkH3k4me3BoneMarrow
         type bigWig
         shortLabel Bone marrow
         longLabel Avg. H3K4me3 level of 4 bone marrow experiments (tissues and primary cells only)
         color 184,120,120
         parent encode4RegMarkH3k4me3 off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/boneMarrowH3K4me3.bw
         priority 2
 
         track encode4RegMarkH3k4me3Brain
         type bigWig
         shortLabel Brain
         longLabel Avg. H3K4me3 level of 27 brain experiments (tissues and primary cells only)
         color 155,155,18
         parent encode4RegMarkH3k4me3
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/brainH3K4me3.bw
         priority 3
 
         track encode4RegMarkH3k4me3ConnectiveTissue
         type bigWig
         shortLabel Connective tissue
         longLabel H3K4me3 level of 1 connective tissue experiment (tissues and primary cells only)
         color 138,135,169
         parent encode4RegMarkH3k4me3 off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/connectiveTissueH3K4me3.bw
         priority 4
 
         track encode4RegMarkH3k4me3Embryo
         type bigWig
         shortLabel Embryo
         longLabel Avg. H3K4me3 level of 6 embryo experiments (tissues and primary cells only)
         color 118,158,101
         parent encode4RegMarkH3k4me3 off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/embryoH3K4me3.bw
         priority 5
 
         track encode4RegMarkH3k4me3Epithelium
         type bigWig
         shortLabel Epithelium
         longLabel Avg. H3K4me3 level of 5 epithelium experiments (tissues and primary cells only)
         color 221,126,107
         parent encode4RegMarkH3k4me3 off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/epitheliumH3K4me3.bw
         priority 6
 
         track encode4RegMarkH3k4me3Heart
         type bigWig
         shortLabel Heart
         longLabel Avg. H3K4me3 level of 10 heart experiments (tissues and primary cells only)
         color 116,50,165
         parent encode4RegMarkH3k4me3 off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/heartH3K4me3.bw
         priority 7
 
         track encode4RegMarkH3k4me3Intestine
         type bigWig
         shortLabel Intestine
         longLabel Avg. H3K4me3 level of 4 intestine experiments (tissues and primary cells only)
         color 121,92,166
         parent encode4RegMarkH3k4me3 off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/intestineH3K4me3.bw
         priority 8
 
         track encode4RegMarkH3k4me3Kidney
         type bigWig
         shortLabel Kidney
         longLabel Avg. H3K4me3 level of 5 kidney experiments (tissues and primary cells only)
         color 92,161,153
         parent encode4RegMarkH3k4me3
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/kidneyH3K4me3.bw
         priority 9
 
         track encode4RegMarkH3k4me3Limb
         type bigWig
         shortLabel Limb
         longLabel Avg. H3K4me3 level of 6 limb experiments (tissues and primary cells only)
         color 95,88,237
         parent encode4RegMarkH3k4me3 off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/limbH3K4me3.bw
         priority 10
 
         track encode4RegMarkH3k4me3Liver
         type bigWig
         shortLabel Liver
         longLabel Avg. H3K4me3 level of 9 liver experiments (tissues and primary cells only)
         color 137,152,82
         parent encode4RegMarkH3k4me3
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/liverH3K4me3.bw
         priority 11
 
         track encode4RegMarkH3k4me3Lung
         type bigWig
         shortLabel Lung
         longLabel Avg. H3K4me3 level of 5 lung experiments (tissues and primary cells only)
         color 130,163,45
         parent encode4RegMarkH3k4me3 off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/lungH3K4me3.bw
         priority 12
 
         track encode4RegMarkH3k4me3Placenta
         type bigWig
         shortLabel Placenta
         longLabel H3K4me3 level of 1 placenta experiment (tissues and primary cells only)
         color 104,171,71
         parent encode4RegMarkH3k4me3 off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/placentaH3K4me3.bw
         priority 13
 
         track encode4RegMarkH3k4me3SmallIntestine
         type bigWig
         shortLabel Small intestine
         longLabel H3K4me3 level of 1 small intestine experiment (tissues and primary cells only)
         color 98,98,41
         parent encode4RegMarkH3k4me3 off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/smallIntestineH3K4me3.bw
         priority 14
 
         track encode4RegMarkH3k4me3Spleen
         type bigWig
         shortLabel Spleen
         longLabel H3K4me3 level of 1 spleen experiment (tissues and primary cells only)
         color 136,157,97
         parent encode4RegMarkH3k4me3 off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/spleenH3K4me3.bw
         priority 15
 
         track encode4RegMarkH3k4me3Stomach
         type bigWig
         shortLabel Stomach
         longLabel Avg. H3K4me3 level of 4 stomach experiments (tissues and primary cells only)
         color 145,144,99
         parent encode4RegMarkH3k4me3 off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/stomachH3K4me3.bw
         priority 16
 
         track encode4RegMarkH3k4me3Testis
         type bigWig
         shortLabel Testis
         longLabel H3K4me3 level of 1 testis experiment (tissues and primary cells only)
         color 139,140,140
         parent encode4RegMarkH3k4me3 off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/testisH3K4me3.bw
         priority 17
 
         track encode4RegMarkH3k4me3Thymus
         type bigWig
         shortLabel Thymus
         longLabel H3K4me3 level of 1 thymus experiment (tissues and primary cells only)
         color 142,124,195
         parent encode4RegMarkH3k4me3 off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/thymusH3K4me3.bw
         priority 18
 
         track encode4RegMarkH3k4me3AllBlood
         type bigWig
         shortLabel Blood (all biosamples)
         longLabel H3K4me3 level of 1 blood experiment (all biosamples)
         color 254,75,173
         parent encode4RegMarkH3k4me3
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/bloodH3K4me3All.bw
         priority 19
 
         track encode4RegMarkH3k4me3AllEmbryo
         type bigWig
         shortLabel Embryo (all biosamples)
         longLabel Avg. H3K4me3 level of 11 embryo experiments (all biosamples)
         color 118,158,101
         parent encode4RegMarkH3k4me3 off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/embryoH3K4me3All.bw
         priority 20
 
         track encode4RegMarkH3k4me3AllMuscle
         type bigWig
         shortLabel Muscle (all biosamples)
         longLabel Avg. H3K4me3 level of 2 muscle experiments (all biosamples)
         color 137,135,170
         parent encode4RegMarkH3k4me3
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/muscleH3K4me3All.bw
         priority 21
 
         track encode4RegMarkH3k4me3AllSpleen
         type bigWig
         shortLabel Spleen (all biosamples)
         longLabel Avg. H3K4me3 level of 3 spleen experiments (all biosamples)
         color 136,157,97
         parent encode4RegMarkH3k4me3 off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/spleenH3K4me3All.bw
         priority 22
 
     track encode4RegMarkCtcf
     container multiWig
     noInherit on
     type bigWig
     superTrack encode4Reg hide
     shortLabel CTCF (Layered)
     longLabel CTCF binding signal from ChIP-seq, averaged by organ/tissue
     visibility hide
     viewLimits 0:100
     autoScale on
     maxHeightPixels 100:50:11
     aggregate transparentOverlay
     showSubtrackColorOnUi on
     priority 1.5
     dragAndDrop subtracks
     allButtonPair on
     html encode4RegMarkCtcf.html
 
         track encode4RegMarkCtcfBoneMarrow
         type bigWig
         shortLabel Bone marrow
         longLabel Avg. CTCF level of 2 bone marrow experiments (tissues and primary cells only)
         color 184,120,120
         parent encode4RegMarkCtcf off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/boneMarrowCTCF.bw
         priority 1
 
         track encode4RegMarkCtcfBrain
         type bigWig
         shortLabel Brain
         longLabel Avg. CTCF level of 7 brain experiments (tissues and primary cells only)
         color 155,155,18
         parent encode4RegMarkCtcf
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/brainCTCF.bw
         priority 2
 
         track encode4RegMarkCtcfConnectiveTissue
         type bigWig
         shortLabel Connective tissue
         longLabel CTCF level of 1 connective tissue experiment (tissues and primary cells only)
         color 138,135,169
         parent encode4RegMarkCtcf off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/connectiveTissueCTCF.bw
         priority 3
 
         track encode4RegMarkCtcfHeart
         type bigWig
         shortLabel Heart
         longLabel Avg. CTCF level of 2 heart experiments (tissues and primary cells only)
         color 116,50,165
         parent encode4RegMarkCtcf off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/heartCTCF.bw
         priority 4
 
         track encode4RegMarkCtcfIntestine
         type bigWig
         shortLabel Intestine
         longLabel CTCF level of 1 intestine experiment (tissues and primary cells only)
         color 121,92,166
         parent encode4RegMarkCtcf off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/intestineCTCF.bw
         priority 5
 
         track encode4RegMarkCtcfKidney
         type bigWig
         shortLabel Kidney
         longLabel Avg. CTCF level of 2 kidney experiments (tissues and primary cells only)
         color 92,161,153
         parent encode4RegMarkCtcf
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/kidneyCTCF.bw
         priority 6
 
         track encode4RegMarkCtcfLiver
         type bigWig
         shortLabel Liver
         longLabel Avg. CTCF level of 3 liver experiments (tissues and primary cells only)
         color 137,152,82
         parent encode4RegMarkCtcf
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/liverCTCF.bw
         priority 7
 
         track encode4RegMarkCtcfLung
         type bigWig
         shortLabel Lung
         longLabel Avg. CTCF level of 3 lung experiments (tissues and primary cells only)
         color 130,163,45
         parent encode4RegMarkCtcf off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/lungCTCF.bw
         priority 8
 
         track encode4RegMarkCtcfSmallIntestine
         type bigWig
         shortLabel Small intestine
         longLabel CTCF level of 1 small intestine experiment (tissues and primary cells only)
         color 98,98,41
         parent encode4RegMarkCtcf off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/smallIntestineCTCF.bw
         priority 9
 
         track encode4RegMarkCtcfSpleen
         type bigWig
         shortLabel Spleen
         longLabel CTCF level of 1 spleen experiment (tissues and primary cells only)
         color 136,157,97
         parent encode4RegMarkCtcf off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/spleenCTCF.bw
         priority 10
 
         track encode4RegMarkCtcfStomach
         type bigWig
         shortLabel Stomach
         longLabel CTCF level of 1 stomach experiment (tissues and primary cells only)
         color 145,144,99
         parent encode4RegMarkCtcf off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/stomachCTCF.bw
         priority 11
 
         track encode4RegMarkCtcfTestis
         type bigWig
         shortLabel Testis
         longLabel CTCF level of 1 testis experiment (tissues and primary cells only)
         color 139,140,140
         parent encode4RegMarkCtcf off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/testisCTCF.bw
         priority 12
 
         track encode4RegMarkCtcfThymus
         type bigWig
         shortLabel Thymus
         longLabel CTCF level of 1 thymus experiment (tissues and primary cells only)
         color 142,124,195
         parent encode4RegMarkCtcf off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/thymusCTCF.bw
         priority 13
 
         track encode4RegMarkCtcfAllBlood
         type bigWig
         shortLabel Blood (all biosamples)
         longLabel CTCF level of 1 blood experiment (all biosamples)
         color 254,75,173
         parent encode4RegMarkCtcf
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/bloodCTCFAll.bw
         priority 14
 
         track encode4RegMarkCtcfAllEmbryo
         type bigWig
         shortLabel Embryo (all biosamples)
         longLabel Avg. CTCF level of 4 embryo experiments (all biosamples)
         color 118,158,101
         parent encode4RegMarkCtcf off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/embryoCTCFAll.bw
         priority 15
 
         track encode4RegMarkCtcfAllMuscle
         type bigWig
         shortLabel Muscle (all biosamples)
         longLabel CTCF level of 1 muscle experiment (all biosamples)
         color 137,135,170
         parent encode4RegMarkCtcf
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/muscleCTCFAll.bw
         priority 16
 
         track encode4RegMarkCtcfAllSpleen
         type bigWig
         shortLabel Spleen (all biosamples)
         longLabel Avg. CTCF level of 3 spleen experiments (all biosamples)
         color 136,157,97
         parent encode4RegMarkCtcf off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/spleenCTCFAll.bw
         priority 17
 
     track encode4RegTxn
     container multiWig
     noInherit on
     type bigWig
     superTrack encode4Reg hide
     shortLabel Transcription (Layered)
     longLabel Strand-specific transcription signal measured by total RNA-seq, averaged by organ/tissue
     visibility hide
     autoScale on
     maxHeightPixels 100:32:11
     aggregate transparentOverlay
     showSubtrackColorOnUi on
     priority 1.6
     dragAndDrop subtracks
     allButtonPair on
     html encode4RegTxn.html
 
         track encode4RegTxnAdrenalGlandPlus
         type bigWig
         shortLabel adrenal gland +
         longLabel Avg. + strand total RNA-seq level of 35 adrenal gland experiments (tissues and primary cells only)
         color 90,179,68
         parent encode4RegTxn off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/adrenalGlandPlus.bw
         priority 1
 
         track encode4RegTxnAdrenalGlandMinus
         type bigWig
         shortLabel adrenal gland -
         longLabel Avg. - strand total RNA-seq level of 35 adrenal gland experiments (tissues and primary cells only)
         color 90,179,68
         parent encode4RegTxn off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/adrenalGlandMinus.bw
         priority 2
         negateValues on
 
         track encode4RegTxnBloodPlus
         type bigWig
         shortLabel blood +
         longLabel Avg. + strand total RNA-seq level of 53 blood experiments (tissues and primary cells only)
         color 254,75,173
         parent encode4RegTxn
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/bloodPlus.bw
         priority 3
 
         track encode4RegTxnBloodMinus
         type bigWig
         shortLabel blood -
         longLabel Avg. - strand total RNA-seq level of 53 blood experiments (tissues and primary cells only)
         color 254,75,173
         parent encode4RegTxn
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/bloodMinus.bw
         priority 4
         negateValues on
 
         track encode4RegTxnBoneMarrowPlus
         type bigWig
         shortLabel bone marrow +
         longLabel Avg. + strand total RNA-seq level of 242 bone marrow experiments (tissues and primary cells only)
         color 184,120,120
         parent encode4RegTxn off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/boneMarrowPlus.bw
         priority 5
 
         track encode4RegTxnBoneMarrowMinus
         type bigWig
         shortLabel bone marrow -
         longLabel Avg. - strand total RNA-seq level of 242 bone marrow experiments (tissues and primary cells only)
         color 184,120,120
         parent encode4RegTxn off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/boneMarrowMinus.bw
         priority 6
         negateValues on
 
         track encode4RegTxnBrainPlus
         type bigWig
         shortLabel brain +
         longLabel Avg. + strand total RNA-seq level of 80 brain experiments (tissues and primary cells only)
         color 155,155,18
         parent encode4RegTxn
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/brainPlus.bw
         priority 7
 
         track encode4RegTxnBrainMinus
         type bigWig
         shortLabel brain -
         longLabel Avg. - strand total RNA-seq level of 80 brain experiments (tissues and primary cells only)
         color 155,155,18
         parent encode4RegTxn
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/brainMinus.bw
         priority 8
         negateValues on
 
         track encode4RegTxnHeartPlus
         type bigWig
         shortLabel heart +
         longLabel Avg. + strand total RNA-seq level of 40 heart experiments (tissues and primary cells only)
         color 116,50,165
         parent encode4RegTxn off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/heartPlus.bw
         priority 9
 
         track encode4RegTxnHeartMinus
         type bigWig
         shortLabel heart -
         longLabel Avg. - strand total RNA-seq level of 40 heart experiments (tissues and primary cells only)
         color 116,50,165
         parent encode4RegTxn off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/heartMinus.bw
         priority 10
         negateValues on
 
         track encode4RegTxnLiverPlus
         type bigWig
         shortLabel liver +
         longLabel Avg. + strand total RNA-seq level of 4 liver experiments (tissues and primary cells only)
         color 137,152,82
         parent encode4RegTxn
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/liverPlus.bw
         priority 11
 
         track encode4RegTxnLiverMinus
         type bigWig
         shortLabel liver -
         longLabel Avg. - strand total RNA-seq level of 4 liver experiments (tissues and primary cells only)
         color 137,152,82
         parent encode4RegTxn
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/liverMinus.bw
         priority 12
         negateValues on
 
         track encode4RegTxnMusclePlus
         type bigWig
         shortLabel muscle +
         longLabel Avg. + strand total RNA-seq level of 35 muscle experiments (tissues and primary cells only)
         color 137,135,170
         parent encode4RegTxn
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/musclePlus.bw
         priority 13
 
         track encode4RegTxnMuscleMinus
         type bigWig
         shortLabel muscle -
         longLabel Avg. - strand total RNA-seq level of 35 muscle experiments (tissues and primary cells only)
         color 137,135,170
         parent encode4RegTxn
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/muscleMinus.bw
         priority 14
         negateValues on
 
         track encode4RegTxnAllBloodPlus
         type bigWig
         shortLabel blood + (all biosamples)
         longLabel Avg. + strand total RNA-seq level of 71 blood experiments (all biosamples)
         color 254,75,173
         parent encode4RegTxn off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/bloodPlusAll.bw
         priority 15
 
         track encode4RegTxnAllBloodMinus
         type bigWig
         shortLabel blood - (all biosamples)
         longLabel Avg. - strand total RNA-seq level of 71 blood experiments (all biosamples)
         color 254,75,173
         parent encode4RegTxn off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/bloodMinusAll.bw
         priority 16
         negateValues on
 
         track encode4RegTxnAllEmbryoPlus
         type bigWig
         shortLabel embryo + (all biosamples)
         longLabel Avg. + strand total RNA-seq level of 12 embryo experiments (all biosamples)
         color 118,158,101
         parent encode4RegTxn off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/embryoPlusAll.bw
         priority 17
 
         track encode4RegTxnAllEmbryoMinus
         type bigWig
         shortLabel embryo - (all biosamples)
         longLabel Avg. - strand total RNA-seq level of 12 embryo experiments (all biosamples)
         color 118,158,101
         parent encode4RegTxn off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/embryoMinusAll.bw
         priority 18
         negateValues on
 
         track encode4RegTxnAllSpleenPlus
         type bigWig
         shortLabel spleen + (all biosamples)
         longLabel Avg. + strand total RNA-seq level of 4 spleen experiments (all biosamples)
         color 136,157,97
         parent encode4RegTxn off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/spleenPlusAll.bw
         priority 19
 
         track encode4RegTxnAllSpleenMinus
         type bigWig
         shortLabel spleen - (all biosamples)
         longLabel Avg. - strand total RNA-seq level of 4 spleen experiments (all biosamples)
         color 136,157,97
         parent encode4RegTxn off
         bigDataUrl /gbdb/mm10/encode4/regulation/organAve/spleenMinusAll.bw
         priority 20
         negateValues on
 
 
 include encode4RegEpigenetics.ra
 include encode4RegRnaSeq.ra
 include encode4RegTfChip.ra