55c5be8236794e23ce8b00162917b5d3dbe83b7e
hiram
  Fri Jan 16 16:37:31 2026 -0800
now checking for lift over existing and providing a download link refs #31811

diff --git src/hg/htdocs/liftRequest.html src/hg/htdocs/liftRequest.html
index 6c9fbbfb9ad..c5a2a465e1e 100755
--- src/hg/htdocs/liftRequest.html
+++ src/hg/htdocs/liftRequest.html
@@ -7,62 +7,68 @@
 <link rel='stylesheet' type='text/css' href='<!--#echo var='ROOT' -->/style/jquery-ui.css'>
 <link rel='stylesheet' type='text/css' href='<!--#echo var='ROOT' -->/style/HGStyle.css'>
 <link rel='stylesheet' type='text/css' href='<!--#echo var='ROOT' -->/style/liftRequest.css'>
 
 <div id="formContainer" class="form-container">
     <h1>Genome Assembly Alignment Request</h1>
 
     <p>
     On this page you can request a whole-genome alignment between two genomes that are on the UCSC Genome Browser.
     Such alignments can take thousands of compute hours to produce.
     The alignment here will be produced on the Galaxy platform, using a
     workflow that uses TACC high performance compute GPU resources. The full
     process may take up to a few days. You will receive an email when it is
     complete.
     </p>
-    </p>
-    Once complete,  will find two new tracks on both assemblies, one with the full alignment results ("all chains"), and one
+    <p>
+    Once complete, your will find two new tracks on both assemblies, one with the full alignment results ("all chains"), and one
     track with the best alignment (single coverage) for every basepair, which can be used for "liftOver".
     Since these tracks are single-coverage on the current genome, the alignments are reciprocal so one is produced
     per assembly.
     For more information on how to download these chain files and use liftOver, see --here--.
     Once these tracks are available, you can also use our Quicklift feature to lift annotations on-the-fly, as you browser,
     see --here-- for more information.
 
 
     </p>
     <p>If one of the two genomes is not on the UCSC browser yet, please request it first on our <a href="https://genome.ucsc.edu/assemblySearch.html">Assembly Request Page</a>, then come back here later.
     </p>
 
     <div class="form-group">
         <label for="genomeSearch1">Assembly 1</label>
         <div class="assembly-input-wrapper">
             <input id="genomeSearch1" type="text" placeholder="Search any species, genome or assembly name" autocomplete="off">
             <input id="genomeSearchButton1" value="Search" type="button">
         </div>
         <div id="genomeLabel1" class="selected-assembly">No assembly selected</div>
     </div>
 
     <div class="form-group">
         <label for="genomeSearch2">Assembly 2</label>
         <div class="assembly-input-wrapper">
             <input id="genomeSearch2" type="text" placeholder="Search any species, genome or assembly name" autocomplete="off">
             <input id="genomeSearchButton2" value="Search" type="button">
         </div>
         <div id="genomeLabel2" class="selected-assembly">No assembly selected</div>
     </div>
 
+    <div id="liftExists" class="form-group" style="display: none;">
+        <div class="description" id="liftPath">
+            <!-- message for lift over file path -->
+        </div>
+    </div>
+
     <div class="form-group">
         <label for="emailInput">Email Address</label>
         <div class="description">You will receive a notification at this address when the alignment is complete.</div>
         <input id="emailInput" type="email" placeholder="your.email@example.com">
     </div>
 
     <div class="form-group">
         <label for="commentsInput">Comments (optional)</label>
         <div class="description">Any additional information or notes about this alignment request.</div>
         <textarea id="commentsInput" placeholder="Enter any additional information here..."></textarea>
     </div>
 
     <div class="form-group">
         <input id="submitBtn" type="button" value="Submit Request" onclick="submitForm()">
     </div>
@@ -70,22 +76,22 @@
 
 <div id="successMessage">
     <h2>Your request has been submitted, you will receive an email when the alignment is complete.</h2>
     <a href="../cgi-bin/hgGateway">Back to the genome browser gateway page</a>
 </div>
 
 <div id="errorMessage">
     <h3>Error</h3>
     <p id="errorText"></p>
 </div>
 
 <hr />
 </div><!-- closing gbsPage from gbPageStartHardcoded.html -->
 </div><!-- closing container-fluid from gbPageStartHardcoded.html -->
 <!--#include virtual="$ROOT/inc/gbFooterHardcoded.html"-->
-<script src="<!--#echo var='ROOT' -->/js/liftRequest.js"></script>
 <script src="<!--#echo var='ROOT' -->/js/jquery.js"></script>
 <script src="<!--#echo var='ROOT' -->/js/jquery.plugins.js"></script>
 <script src="<!--#echo var='ROOT' -->/js/utils.js"></script>
 <script src="<!--#echo var='ROOT' -->/js/jquery-ui.js"></script>
 <script src="<!--#echo var='ROOT' -->/js/autocompleteCat.js"></script>
+<script src="<!--#echo var='ROOT' -->/js/liftRequest.js"></script>
 </body></html>