+ On this page you can request a whole-genome alignment between two genomes that are on the UCSC Genome Browser. + Such alignments can take thousands of compute hours to produce. + The alignment here will be produced on the Galaxy platform, using a + workflow that uses TACC high performance compute GPU resources. The full + process may take up to a few days. You will receive an email when it is + complete. +
+ + Once complete, will find two new tracks on both assemblies, one with the full alignment results ("all chains"), and one + track with the best alignment (single coverage) for every basepair, which can be used for "liftOver". + Since these tracks are single-coverage on the current genome, the alignments are reciprocal so one is produced + per assembly. + For more information on how to download these chain files and use liftOver, see --here--. + Once these tracks are available, you can also use our Quicklift feature to lift annotations on-the-fly, as you browser, + see --here-- for more information. + + + +If one of the two genomes is not on the UCSC browser yet, please request it first on our Assembly Request Page, then come back here later. +
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