92634f0f5c8afcb109341543a5fc2fe978cba657 hiram Sun Jun 1 13:25:03 2025 -0700 adding updated HPRC assemblies refs #35415 diff --git src/hg/makeDb/doc/asmHubs/master.run.list src/hg/makeDb/doc/asmHubs/master.run.list index f6fca781ce1..6f0c3852130 100644 --- src/hg/makeDb/doc/asmHubs/master.run.list +++ src/hg/makeDb/doc/asmHubs/master.run.list @@ -1186,67 +1186,91 @@ ./runBuild GCA_018469935.1_HG02717.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018469935.2_HG02717_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018469945.1_HG02630.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018469945.2_HG02630_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018469955.1_HG02630.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018469955.2_HG02630_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018469965.1_HG01358.alt.pat.f1_v2.1 primates Homo_sapiens ./runBuild GCA_018469965.2_HG01358_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018470425.1_HG02717.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018470425.2_HG02717_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018470435.1_HG02572.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018470435.2_HG02572_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018470445.1_HG02572.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018470445.2_HG02572_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018470455.1_HG02886.pri.mat.f1_v2 primates Homo_sapiens +./runBuild GCA_018470455.2_HG02886_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018470465.1_HG02886.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018470465.2_HG02886_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018471065.1_HG01175.alt.pat.f1_v2 primates Homo_sapiens +./runBuild GCA_018471065.2_HG01175_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018471075.1_HG01106.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018471075.2_HG01106_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018471085.1_HG01175.pri.mat.f1_v2 primates Homo_sapiens +./runBuild GCA_018471085.2_HG01175_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018471095.1_HG00741.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018471095.2_HG00741_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018471105.1_HG00741.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018471105.2_HG00741_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018471345.1_HG01106.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018471345.2_HG01106_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018471515.1_HG00438.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018471515.2_HG00438_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018471525.1_HG02148.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018471525.2_HG02148_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018471535.1_HG02148.pri.mat.f1_v2 primates Homo_sapiens +./runBuild GCA_018471535.2_HG02148_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018471545.1_HG01952.pri.mat.f1_v2 primates Homo_sapiens +./runBuild GCA_018471545.2_HG01952_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018471555.1_HG01952.alt.pat.f1_v2 primates Homo_sapiens +./runBuild GCA_018471555.2_HG01952_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018472565.1_HG00673.pri.mat.f1_v2 primates Homo_sapiens +./runBuild GCA_018472565.2_HG00673_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018472575.1_HG00621.alt.pat.f1_v2 primates Homo_sapiens +./runBuild GCA_018472575.2_HG00621_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018472585.1_HG00673.alt.pat.f1_v2 primates Homo_sapiens +./runBuild GCA_018472585.2_HG00673_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018472595.1_HG00438.alt.pat.f1_v2 primates Homo_sapiens +./runBuild GCA_018472595.2_HG00438_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018472605.1_HG00621.pri.mat.f1_v2 primates Homo_sapiens +./runBuild GCA_018472605.2_HG00621_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018472685.1_HG01071.pri.mat.f1_v2 primates Homo_sapiens +./runBuild GCA_018472685.2_HG01071_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018472695.1_HG01928.pri.mat.f1_v2 primates Homo_sapiens +./runBuild GCA_018472695.2_HG01928_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018472705.1_HG01928.alt.pat.f1_v2 primates Homo_sapiens +./runBuild GCA_018472705.2_HG01928_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018472715.1_HG00735.alt.pat.f1_v2 primates Homo_sapiens +./runBuild GCA_018472715.2_HG00735_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018472725.1_HG01071.alt.pat.f1_v2 primates Homo_sapiens +./runBuild GCA_018472725.2_HG01071_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018472765.1_HG00735.pri.mat.f1_v2 primates Homo_sapiens +./runBuild GCA_018472765.3_HG00735_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018472825.1_HG03579.pri.mat.f1_v2 primates Homo_sapiens +./runBuild GCA_018472825.2_HG03579_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018472835.1_HG03579.alt.pat.f1_v2 primates Homo_sapiens +./runBuild GCA_018472835.2_HG03579_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018472845.1_HG01978.alt.pat.f1_v2 primates Homo_sapiens +./runBuild GCA_018472845.2_HG01978_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018472855.1_HG03453.pri.mat.f1_v2 primates Homo_sapiens +./runBuild GCA_018472855.2_HG03453_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018472865.1_HG01978.pri.mat.f1_v2 primates Homo_sapiens +./runBuild GCA_018472865.2_HG01978_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018473295.1_HG03540.pri.mat.f1_v2 primates Homo_sapiens +./runBuild GCA_018473295.2_HG03540_mat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018473305.1_HG03453.alt.pat.f1_v2 primates Homo_sapiens +./runBuild GCA_018473305.2_HG03453_pat_hprc_f2 primates Homo_sapiens ./runBuild GCA_018473315.1_HG03540.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018492705.1_fAloSap1.alt fish Alosa_sapidissima ./runBuild GCA_018503245.1_HG03486.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018503255.1_NA18906.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018503265.1_NA19240.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018503275.1_NA19240.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018503285.1_NA18906.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018503525.1_HG03486.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018503575.1_HG02818.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018503585.1_HG02818.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018504045.1_HG01243.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018504055.1_HG02080.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018504065.1_HG02723.pri.mat.f1_v2 primates Homo_sapiens ./runBuild GCA_018504075.1_HG02723.alt.pat.f1_v2 primates Homo_sapiens ./runBuild GCA_018504085.1_HG02080.pri.mat.f1_v2 primates Homo_sapiens @@ -1991,35 +2015,62 @@ ./runBuild GCA_045364805.1_bWilVid1_haplotype_2 birds Willisornis_vidua ./runBuild GCA_045364815.1_rPodExp1_haplotype_2 vertebrate Podocnemis_expansa ./runBuild GCA_045519325.1_bGuaGua1_haplotype_2 birds Guaruba_guarouba ./runBuild GCA_045781085.1_rPanTec1.hap2 vertebrate Pangshura_tecta ./runBuild GCA_045781095.1_rPanTec1.hap1 vertebrate Pangshura_tecta ./runBuild GCA_045843765.1_mUroPar1.hap2 mammals Urocitellus_parryii ./runBuild GCA_045843805.1_mUroPar1.hap1 mammals Urocitellus_parryii ./runBuild GCA_046126795.1_rDibSmi1.hap1 vertebrate Dibamus_cf._smithi ./runBuild GCA_046126825.1_rDibSmi1.hap2 vertebrate Dibamus_cf._smithi ./runBuild GCA_046129645.1_bCyaCrs1.hap2 birds Cyanocitta_cristata ./runBuild GCA_046129655.1_bCyaCrs1.hap1 birds Cyanocitta_cristata ./runBuild GCA_046129695.1_bLonStr1.mat birds Lonchura_striata ./runBuild GCA_046129705.1_bLonStr1.pat birds Lonchura_striata ./runBuild GCA_046255685.1_fAmbSpe1.hap1 fish Amblyopsis_spelaea ./runBuild GCA_046255725.1_fAmbSpe1.hap2 fish Amblyopsis_spelaea +./runBuild GCA_046332005.1_PAN027_mat_v1.0 primates Homo_sapiens +./runBuild GCA_046332015.1_ASM4633201v1 primates Homo_sapiens +./runBuild GCA_046332025.1_ASM4633202v1 primates Homo_sapiens +./runBuild GCA_046332035.1_PAN027_pat_v1.0 primates Homo_sapiens +./runBuild GCA_046332065.1_ASM4633206v1 primates Homo_sapiens +./runBuild GCA_046332135.1_ASM4633213v1 primates Homo_sapiens +./runBuild GCA_046332145.1_ASM4633214v1 primates Homo_sapiens +./runBuild GCA_046332185.1_ASM4633218v1 primates Homo_sapiens +./runBuild GCA_046332195.1_ASM4633219v1 primates Homo_sapiens +./runBuild GCA_046332225.1_ASM4633222v1 primates Homo_sapiens +./runBuild GCA_046332235.1_ASM4633223v1 primates Homo_sapiens +./runBuild GCA_046332285.1_ASM4633228v1 primates Homo_sapiens +./runBuild GCA_046332305.1_ASM4633230v1 primates Homo_sapiens +./runBuild GCA_046332355.1_ASM4633235v1 primates Homo_sapiens +./runBuild GCA_046332365.1_ASM4633236v1 primates Homo_sapiens +./runBuild GCA_046332375.1_ASM4633237v1 primates Homo_sapiens +./runBuild GCA_046332435.1_ASM4633243v1 primates Homo_sapiens +./runBuild GCA_046332455.1_ASM4633245v1 primates Homo_sapiens +./runBuild GCA_046332475.1_ASM4633247v1 primates Homo_sapiens +./runBuild GCA_046332485.1_ASM4633248v1 primates Homo_sapiens +./runBuild GCA_046332495.1_ASM4633249v1 primates Homo_sapiens ./runBuild GCA_046562875.1_mPanOnc1_haplotype_2 mammals Panthera_onca ./runBuild GCA_046562885.1_mPanOnc1_haplotype_1 mammals Panthera_onca ./runBuild GCA_046562895.1_mTriInu1_haplotype_2 mammals Trichechus_inunguis ./runBuild GCA_046562985.1_mTriInu1_haplotype_1 mammals Trichechus_inunguis +./runBuild GCA_046629205.1_NA20503_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_046629215.1_NA20762_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_046629225.1_NA20806_hap2_hprc_f2 primates Homo_sapiens ./runBuild GCA_046629235.1_NA20806_hap1_hprc_f2 primates Homo_sapiens +./runBuild GCA_046629265.1_NA20827_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_046629565.1_NA20503_hap2_hprc_f2 primates Homo_sapiens +./runBuild GCA_046629575.1_NA20762_hap2_hprc_f2 primates Homo_sapiens ./runBuild GCA_047301625.1_ASM4730162v1 fish Choerodon_schoenleinii ./runBuild GCA_047511565.1_fPolLow2.hap1 fish Polymixia_lowei ./runBuild GCA_047511595.1_fPolLow2.hap2 fish Polymixia_lowei ./runBuild GCA_047511605.1_mCasCan1.hap2 mammals Castor_canadensis ./runBuild GCA_047511655.1_mCasCan1.hap1 mammals Castor_canadensis ./runBuild GCA_047511675.1_mMarFla1.hap1 mammals Marmota_flaviventris ./runBuild GCA_047512175.1_mMarFla1.hap2 mammals Marmota_flaviventris ./runBuild GCA_047715955.1_rBraPum1.hap2 vertebrate Bradypodion_pumilum ./runBuild GCA_047715975.1_rBraPum1.hap1 vertebrate Bradypodion_pumilum ./runBuild GCA_047774235.1_bZonAlb1.hap2 birds Zonotrichia_albicollis ./runBuild GCA_047830755.1_bZonAlb1.hap1 birds Zonotrichia_albicollis ./runBuild GCA_047922975.1_bEudEle1_v1.hap2 birds Eudromia_elegans ./runBuild GCA_047922985.1_bEudEle1_v1.hap1 birds Eudromia_elegans ./runBuild GCA_047948205.1_ASM4794820v1 invertebrate Lycorma_delicatula ./runBuild GCA_047948215.1_ASM4794821v1 invertebrate Lycorma_delicatula