f44053f200533c80ccdb790cd5943f3cbf105bd6 hiram Wed Mar 5 08:10:24 2025 -0800 adding one per user request and VGP update refs #29545 diff --git src/hg/makeDb/doc/asmHubs/master.run.list src/hg/makeDb/doc/asmHubs/master.run.list index 3c970f627a5..e16f4b9ba9b 100644 --- src/hg/makeDb/doc/asmHubs/master.run.list +++ src/hg/makeDb/doc/asmHubs/master.run.list @@ -1857,30 +1857,31 @@ ./runBuild GCA_042242135.1_fArrGeo1.hap2 fish Arripis_georgiana ./runBuild GCA_043159975.1_mMacNem.hap1 primates Macaca_nemestrina ./runBuild GCA_043161795.1_mMacNem.hap2 primates Macaca_nemestrina ./runBuild GCA_043250625.1_fSebFas1.pri fish Sebastes_fasciatus ./runBuild GCA_043290065.1_mRhyPet1.hap2 mammals Rhynchocyon_petersi ./runBuild GCA_043290085.1_mRhyPet1.hap1 mammals Rhynchocyon_petersi ./runBuild GCA_043640875.1_fEnoArm2.hap2 fish Enoplosus_armatus ./runBuild GCA_043727835.1_ASM4372783v1 mammals Aselliscus_stoliczkanus ./runBuild GCA_043727955.1_ASM4372795v1 mammals Hipposideros_larvatus ./runBuild GCA_043728065.1_ASM4372806v1 mammals Rhinolophus_affinis ./runBuild GCA_043728145.1_ASM4372814v1 mammals Rhinolophus_trifoliatus ./runBuild GCA_043748575.1_ASM4374857v1 mammals Rhinolophus_perniger_lanosus ./runBuild GCA_043748645.1_ASM4374864v1 mammals Mops_condylurus ./runBuild GCA_043880285.1_ASM4388028v1 mammals Doryrhina_cyclops ./runBuild GCA_043880425.1_ASM4388042v1 mammals Rhinolophus_yonghoiseni +./runBuild GCA_043880545.1_ASM4388054v1 mammals Rhinopoma_microphyllum ./runBuild GCA_043880595.1_ASM4388059v1 mammals Megaderma_spasma ./runBuild GCA_044231645.1_SynOce1_v1.hap2 fish Neosynchiropus_ocellatus ./runBuild GCA_044231665.1_SynOce1_v1.hap1 fish Neosynchiropus_ocellatus ./runBuild GCA_044231675.1_ASM4423167v1 fish Synchiropus_picturatus ./runBuild GCA_044231685.1_ASM4423168v1 fish Synchiropus_picturatus ./runBuild GCA_044704955.1_sPriJap1.hap1 vertebrate Pristiophorus_japonicus ./runBuild GCA_044704965.1_sPriJap1.hap2 vertebrate Pristiophorus_japonicus ./runBuild GCA_045345405.1_bGuaGua1_haplotype_1 birds Guaruba_guarouba ./runBuild GCA_045345505.1_bMorGui1_haplotype_1 birds Morphnus_guianensis ./runBuild GCA_045345515.1_bMorGui1_haplotype_2 birds Morphnus_guianensis ./runBuild GCA_045362485.1_fLetNeb1.hap2 fish Lethrinus_nebulosus ./runBuild GCA_045362495.1_fLetNeb1.hap1 fish Lethrinus_nebulosus ./runBuild GCA_045363885.1_fPriTyp1.hap2 fish Pristipomoides_typus ./runBuild GCA_045363895.1_fPriTyp1.hap1 fish Pristipomoides_typus ./runBuild GCA_045364785.1_rPodExp1_haplotype_1 vertebrate Podocnemis_expansa @@ -1900,32 +1901,40 @@ ./runBuild GCA_046129705.1_bLonStr1.pat birds Lonchura_striata ./runBuild GCA_046255685.1_fAmbSpe1.hap1 fish Amblyopsis_spelaea ./runBuild GCA_046255725.1_fAmbSpe1.hap2 fish Amblyopsis_spelaea ./runBuild GCA_046562875.1_mPanOnc1_haplotype_2 mammals Panthera_onca ./runBuild GCA_046562885.1_mPanOnc1_haplotype_1 mammals Panthera_onca ./runBuild GCA_046562895.1_mTriInu1_haplotype_2 mammals Trichechus_inunguis ./runBuild GCA_046562985.1_mTriInu1_haplotype_1 mammals Trichechus_inunguis ./runBuild GCA_047511565.1_fPolLow2.hap1 fish Polymixia_lowei ./runBuild GCA_047511595.1_fPolLow2.hap2 fish Polymixia_lowei ./runBuild GCA_047511605.1_mCasCan1.hap2 mammals Castor_canadensis ./runBuild GCA_047511655.1_mCasCan1.hap1 mammals Castor_canadensis ./runBuild GCA_047511675.1_mMarFla1.hap1 mammals Marmota_flaviventris ./runBuild GCA_047512175.1_mMarFla1.hap2 mammals Marmota_flaviventris ./runBuild GCA_047715955.1_rBraPum1.hap2 vertebrate Bradypodion_pumilum ./runBuild GCA_047715975.1_rBraPum1.hap1 vertebrate Bradypodion_pumilum +./runBuild GCA_047774235.1_bZonAlb1.hap2 birds Zonotrichia_albicollis +./runBuild GCA_047830755.1_bZonAlb1.hap1 birds Zonotrichia_albicollis +./runBuild GCA_047922975.1_bEudEle1_v1.hap2 birds Eudromia_elegans +./runBuild GCA_047922985.1_bEudEle1_v1.hap1 birds Eudromia_elegans ./runBuild GCA_047948205.1_ASM4794820v1 invertebrate Lycorma_delicatula ./runBuild GCA_047948215.1_ASM4794821v1 invertebrate Lycorma_delicatula +./runBuild GCA_048126635.1_SpiSpi1_v1.hap1 fish Spinachia_spinachia +./runBuild GCA_048126745.1_DamDam1_v1.mat mammals Dama_dama +./runBuild GCA_048127045.1_DamDam1_v1.pat mammals Dama_dama +./runBuild GCA_048127205.1_SpiSpi1_v1.hap2 fish Spinachia_spinachia ./runBuild GCA_900002395.1_PYYM01 invertebrate Plasmodium_yoelii ./runBuild GCA_900006655.3_Susie3 primates Gorilla_gorilla_gorilla ./runBuild GCA_900011295.1_ATCC19606_assembly bacteria Acinetobacter_baumannii ./runBuild GCA_900029915.1_F._proliferatum_NRRL62905_version_1 fungi Fusarium_proliferatum ./runBuild GCA_900036025.1_v1.0 invertebrate Lymnaea_stagnalis ./runBuild GCA_900044135.1_GZPH1RResV1 fungi Fusarium_graminearum ./runBuild GCA_900088365.1_Bl71nemr invertebrate Branchiostoma_lanceolatum ./runBuild GCA_900090025.2_PowCR01 invertebrate Plasmodium_ovale ./runBuild GCA_900090035.2_PocGH01 invertebrate Plasmodium_ovale ./runBuild GCA_900093555.2_GCA_900093555 invertebrate Plasmodium_vivax ./runBuild GCA_900094665.2_CAROLI_EIJ_v1.1 mammals Mus_caroli ./runBuild GCA_900095595.1_PPRFG01 invertebrate Plasmodium_sp._gorilla_clade_G1 ./runBuild GCA_900097025.1_PRG01 invertebrate Plasmodium_reichenowi ./runBuild GCA_900097035.1_PBLACG01 invertebrate Plasmodium_sp._gorilla_clade_G3 ./runBuild GCA_900097045.1_PGABG01 invertebrate Plasmodium_gaboni @@ -2474,30 +2483,32 @@ ./runBuild GCA_965115945.1_mMyoEma1.hap2.1 mammals Myotis_emarginatus ./runBuild GCA_965119305.1_aPelLes1.hap1.1 vertebrate Pelophylax_lessonae ./runBuild GCA_965119315.1_aPelLes1.hap2.1 vertebrate Pelophylax_lessonae ./runBuild GCA_965140185.1_bAthNoc1.hap2.1 birds Athene_noctua ./runBuild GCA_965140235.1_rCarCar1.hap1 vertebrate Caretta_caretta ./runBuild GCA_965140245.1_bAthNoc1.hap1.1 birds Athene_noctua ./runBuild GCA_965140255.1_rLepOli2.hap2 vertebrate Lepidochelys_olivacea ./runBuild GCA_965140275.1_rCarCar1.hap2 vertebrate Caretta_caretta ./runBuild GCA_965140295.1_rLepOli2.hap1 vertebrate Lepidochelys_olivacea ./runBuild GCA_965140915.1_bAytMar2.hap1.1 birds Aythya_marila ./runBuild GCA_965140925.1_bAytMar2.hap2.1 birds Aythya_marila ./runBuild GCA_965151615.1_bCygCol1.1 birds Cygnus_columbianus ./runBuild GCA_965152195.1_rNatDep2.hap2 vertebrate Natator_depressus ./runBuild GCA_965152275.1_rNatDep2.hap1 vertebrate Natator_depressus ./runBuild GCA_965152285.1_rEreImb1.hap2 vertebrate Eretmochelys_imbricata +./runBuild GCA_965153285.1_rPodTil1.hap1.1 vertebrate Podarcis_tiliguerta +./runBuild GCA_965153305.1_rPodTil1.hap2.1 vertebrate Podarcis_tiliguerta ./runBuild GCF_000001215.4_Release_6_plus_ISO1_MT invertebrate Drosophila_melanogaster ./runBuild GCF_000001405.39_GRCh38.p13 primates Homo_sapiens ./runBuild GCF_000001405.40_GRCh38.p14 primates Homo_sapiens ./runBuild GCF_000001635.26_GRCm38.p6 mammals Mus_musculus ./runBuild GCF_000001635.27_GRCm39 mammals Mus_musculus ./runBuild GCF_000001735.3_TAIR10 plants Arabidopsis_thaliana ./runBuild GCF_000001735.4_TAIR10.1 plants Arabidopsis_thaliana ./runBuild GCF_000001895.5_Rnor_6.0 mammals Rattus_norvegicus ./runBuild GCF_000001905.1_Loxafr3.0 mammals Loxodonta_africana ./runBuild GCF_000001985.1_JCVI-PMFA1-2.0 fungi Talaromyces_marneffei_ATCC_18224 ./runBuild GCF_000002035.6_GRCz11 fish Danio_rerio ./runBuild GCF_000002075.1_AplCal3.0 invertebrate Aplysia_californica ./runBuild GCF_000002235.5_Spur_5.0 invertebrate Strongylocentrotus_purpuratus ./runBuild GCF_000002265.2_Rn_Celera mammals Rattus_norvegicus ./runBuild GCF_000002285.3_CanFam3.1 mammals Canis_lupus @@ -2573,30 +2584,31 @@ ./runBuild GCF_000006175.1_ASM617v2 archaea Methanococcus_voltae_A3 ./runBuild GCF_000006255.1_Postia_placenta_V1.0 fungi Postia_placenta_Mad-698-R ./runBuild GCF_000006295.1_JCVI_LOUSE_1.0 invertebrate Pediculus_humanus_corporis ./runBuild GCF_000006335.3_ASM633v3 fungi Candida_tropicalis_MYA-3404 ./runBuild GCF_000006355.2_GCA_000006355.2 invertebrate Plasmodium_knowlesi_strain_H ./runBuild GCF_000006405.1_JCVI_PMG_1.0 invertebrate Perkinsus_marinus_ATCC_50983 ./runBuild GCF_000006425.1_ASM642v1 invertebrate Cryptosporidium_hominis_TU502 ./runBuild GCF_000006445.2_ASM644v2 fungi Debaryomyces_hansenii_CBS767 ./runBuild GCF_000006515.1_JCVI_cmg_v1.0 invertebrate Cryptosporidium_muris_RN66 ./runBuild GCF_000006565.2_TGA4 invertebrate Toxoplasma_gondii_ME49 ./runBuild GCF_000006765.1_ASM676v1 bacteria Pseudomonas_aeruginosa_PAO1 ./runBuild GCF_000006925.2_ASM692v2 bacteria Shigella_flexneri_2a_str._301 ./runBuild GCF_000006945.2_ASM694v2 bacteria Salmonella_enterica ./runBuild GCF_000007345.1_ASM734v1 archaea Methanosarcina_acetivorans_C2A ./runBuild GCF_000008325.1_ASM832v1 bacteria Methylococcus_capsulatus_str._Bath +./runBuild GCF_000008865.2_ASM886v2 bacteria Escherichia_coli_O157_H7_str._Sakai ./runBuild GCF_000009045.1_ASM904v1 bacteria Bacillus_subtilis_subsp._subtilis_str._168 ./runBuild GCF_000009085.1_ASM908v1 bacteria Campylobacter_jejuni_subsp._jejuni_NCTC_11168__ATCC_700819 ./runBuild GCF_000009205.2_ASM920v2 bacteria Clostridioides_difficile_630 ./runBuild GCF_000009225.2_ASM922v1 bacteria Pseudomonas_fluorescens_SBW25 ./runBuild GCF_000009765.2_ASM976v2 bacteria Streptomyces_avermitilis_MA-4680__NBRC_14893 ./runBuild GCF_000010085.1_ASM1008v1 bacteria Sodalis_glossinidius_str._morsitans ./runBuild GCF_000011425.1_ASM1142v1 fungi Aspergillus_nidulans_FGSC_A4 ./runBuild GCF_000012525.1_ASM1252v1 bacteria Synechococcus_elongatus_PCC_7942__FACHB-805 ./runBuild GCF_000013145.1_ASM1314v1 bacteria Ehrlichia_chaffeensis ./runBuild GCF_000015425.1_ASM1542v1 bacteria Acinetobacter_baumannii_ATCC_17978 ./runBuild GCF_000018145.1_ASM1814v1 bacteria Dinoroseobacter_shibae_DFL_12__DSM_16493 ./runBuild GCF_000020025.1_ASM2002v1 bacteria Nostoc_punctiforme_PCC_73102 ./runBuild GCF_000021325.1_ASM2132v1 bacteria Gluconacetobacter_diazotrophicus_PA1_5 ./runBuild GCF_000021865.1_ASM2186v1 bacteria Rhodobacter_capsulatus_SB_1003 ./runBuild GCF_000026365.1_ASM2636v1 fungi Zygosaccharomyces_rouxii