359adb77c8cc1ebc8f1d8013b4d138d1311b2775 hiram Thu Jun 19 11:17:12 2025 -0700 correct email address in the hub.txt files diff --git src/hg/makeDb/doc/asmHubs/mkGenomes.pl src/hg/makeDb/doc/asmHubs/mkGenomes.pl index afc9172385c..48bd32e3b01 100755 --- src/hg/makeDb/doc/asmHubs/mkGenomes.pl +++ src/hg/makeDb/doc/asmHubs/mkGenomes.pl @@ -137,31 +137,31 @@ my $fileCount = 0; my @tdbLines; open (TD, "<$trackDb") or die "can not read trackDb: $trackDb"; while (my $tdbLine = <TD>) { chomp $tdbLine; push @tdbLines, $tdbLine; } close (TD); my $assemblyName = $asmId; $assemblyName =~ s/${accessionId}_//; foreach my $fh (@fhN) { printf $fh "hub %s genome assembly\n", $accessionId; printf $fh "shortLabel %s\n", $orgName; printf $fh "longLabel %s/%s/%s genome assembly\n", $orgName, $descr, $asmId; printf $fh "useOneFile on\n"; - printf $fh "email hclawson\@ucsc.edu\n"; + printf $fh "email genome-www\@soe.ucsc.edu\n"; printf $fh "descriptionUrl html/%s.description.html\n", $asmId; printf $fh "\n"; printf $fh "genome %s\n", $accessionId; printf $fh "taxId %s\n", $taxId if (length($taxId) > 1); printf $fh "groups groups.txt\n"; printf $fh "description %s\n", $orgName; printf $fh "twoBitPath %s.2bit\n", $accessionId; printf $fh "twoBitBptUrl %s.2bit.bpt\n", $accessionId; printf $fh "chromSizes %s.chrom.sizes.txt\n", $accessionId; if ( -s "${buildDir}/${asmId}.chromAlias.bb" ) { printf $fh "chromAliasBb %s.chromAlias.bb\n", $accessionId; } else { printf $fh "chromAlias %s.chromAlias.txt\n", $accessionId; } if ($chromAuthority =~ m/^chromAuthority/) { @@ -357,31 +357,31 @@ printf "transBlat $blatHost$blatHostDomain %d dynamic $accessionDir/$accessionId\n", $blatPort + $hugeGenome; printf "isPcr $blatHost$blatHostDomain %d dynamic $accessionDir/$accessionId\n", $blatPort + $hugeGenome; } else { printf STDERR "# missing ${destDir}/$accessionId.trans.gfidx\n"; } } printf "\n"; # the original multi-file system: my $localHubTxt = "$buildDir/${asmId}.hub.txt"; open (HT, ">$localHubTxt") or die "can not write to $localHubTxt"; printf HT "hub %s genome assembly\n", $accessionId; printf HT "shortLabel %s\n", $orgName; printf HT "longLabel %s/%s/%s genome assembly\n", $orgName, $descr, $asmId; printf HT "genomesFile genomes.txt\n"; - printf HT "email hclawson\@ucsc.edu\n"; + printf HT "email genome-www\@soe.ucsc.edu\n"; printf HT "descriptionUrl html/%s.description.html\n", $asmId; close (HT); # try creating single file hub.txt, one for hgwdev, one for hgdownload my $downloadHubTxt = "$buildDir/${asmId}.download.hub.txt"; open (DL, ">$downloadHubTxt") or die "can not write to $downloadHubTxt"; $localHubTxt = "$buildDir/${asmId}.singleFile.hub.txt"; open (HT, ">$localHubTxt") or die "can not write to $localHubTxt"; writeHubTxtFiles(\*HT, \*DL, $accessionId, $orgName, $descr, $asmId, $asmDate, $defPos, $taxId, $trackDb, $accessionDir, $buildDir, $chromAuthority, $hugeGenome); my $localGenomesFile = "$buildDir/${asmId}.genomes.txt"; open (GF, ">$localGenomesFile") or die "can not write to $localGenomesFile";