fb83822aeeef2f87fa0bf7d1daaea1f365e6d7b5
hiram
  Mon Jun 2 08:57:54 2025 -0700
hgdownload2 disk is full send no more data to hgdownload2 refs #35415

diff --git src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh
index 2cd6d5d1b44..a33629be79c 100755
--- src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh
+++ src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh
@@ -41,34 +41,35 @@
 
 if [ "${badLinks}" -gt 0 ]; then
   printf "ERROR: missing symlink targets:\n" 1>&2
   find "/hive/data/genomes/asmHubs/${dirPath}" -type l -lname \* \
     | xargs --no-run-if-empty ls -lL > /dev/null
   exit 255
 fi
 
 export DS=`date "+%F %T"`
 export destDir="/mirrordata/hubs/${dirPath}"
 printf "### sending %s\t%s\t##########\n" "`basename ${srcDir}`" "${DS}"
 printf "# srcDir: %s\n" "${srcDir}"
 printf "# destDir: %s\n" "${destDir}"
 
 ssh qateam@${downloadDest1} "mkdir -p ${destDir}" 2>&1 | grep -v "X11 forwarding request" || true &
-ssh qateam@${downloadDest2} "mkdir -p ${destDir}" 2>&1 | grep -v "X11 forwarding request" || true
+# ssh qateam@${downloadDest2} "mkdir -p ${destDir}" 2>&1 | grep -v "X11 forwarding request" || true
 ssh qateam@${downloadDest3} "mkdir -p ${destDir}" 2>&1 | grep -v "X11 forwarding request" || true
 wait
-printf "# successful mkdir on ${downloadDest1}, ${downloadDest2} and ${downloadDest3}\n"
+# printf "# successful mkdir on ${downloadDest1}, ${downloadDest2} and ${downloadDest3}\n"
+printf "# successful mkdir on ${downloadDest1} and ${downloadDest3}\n"
 
 ### 2021-12-20 - out of disk space on dynablat-01
 ### 2022-06-01 new dynamic-01 machine more disk space
 
 export dynaBlat="dynablat-01.soe.ucsc.edu"
 
 # export dynaBlat="128.114.119.136"
 
 ### check if there are actually index files to go:
 
 export idxCount=`ls ${srcDir}/*.gfidx 2> /dev/null | wc -l`
 
 if [ "${idxCount}" -gt 0 ]; then
 
 export dynaServerDir="/scratch/hubs/${dirPath}"
@@ -76,37 +77,37 @@
 ssh qateam@$dynaBlat "mkdir -p ${dynaServerDir}" 2>&1 | grep -v "X11 forwarding request" || true
 printf "# successful mkdir on $dynaBlat\n" 1>&2
 
 printf "rsync --stats -a -L -P ${srcDir}/${accession}.2bit \"qateam@$dynaBlat:${dynaServerDir}/\"\n" 1>&2
 rsync --stats -a -L -P ${srcDir}/${accession}.2bit "qateam@$dynaBlat:${dynaServerDir}/" \
   2>&1 | grep -v "X11 forwarding request"
 printf "rsync --stats -a -L -P ${srcDir}/*.gfidx \"qateam@$dynaBlat:${dynaServerDir}/\"\n" 1>&2
 rsync --stats -a -L -P ${srcDir}/*.gfidx "qateam@$dynaBlat:${dynaServerDir}/" \
   2>&1 | grep -v "X11 forwarding request"
 
 fi
 
 # the single file hub genome trackDb file:
 
 printf "rsync --delete --exclude=\"alpha.hub.txt\" --exclude=\"beta.hub.txt\" --exclude=\"public.hub.txt\" --exclude=\"user.hub.txt\" --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest1}:${destDir}/\"\n" 1>&2
-printf "rsync --delete --exclude=\"alpha.hub.txt\" --exclude=\"beta.hub.txt\"  --exclude=\"public.hub.txt\" --exclude=\"user.hub.txt\" --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest2}:${destDir}/\"\n" 1>&2
+# printf "rsync --delete --exclude=\"alpha.hub.txt\" --exclude=\"beta.hub.txt\"  --exclude=\"public.hub.txt\" --exclude=\"user.hub.txt\" --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest2}:${destDir}/\"\n" 1>&2
 printf "rsync --delete --exclude=\"alpha.hub.txt\" --exclude=\"beta.hub.txt\" --exclude=\"public.hub.txt\" --exclude=\"user.hub.txt\" --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest3}:${destDir}/\"\n" 1>&2
 rsync --delete --exclude="alpha.hub.txt" --exclude="beta.hub.txt" --exclude="public.hub.txt"   --exclude="user.hub.txt" --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest1}:${destDir}/" \
   2>&1 | grep -v "X11 forwarding request" &
-rsync --delete --exclude="alpha.hub.txt" --exclude="beta.hub.txt" --exclude="public.hub.txt" --exclude="user.hub.txt" --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest2}:${destDir}/" \
+# rsync --delete --exclude="alpha.hub.txt" --exclude="beta.hub.txt" --exclude="public.hub.txt" --exclude="user.hub.txt" --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest2}:${destDir}/" \
   2>&1 | grep -v "X11 forwarding request"
 rsync --delete --exclude="alpha.hub.txt" --exclude="beta.hub.txt" --exclude="public.hub.txt" --exclude="user.hub.txt" --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest3}:${destDir}/" \
   2>&1 | grep -v "X11 forwarding request"
 wait
 
 # the new single file hub genome trackDb file:
 printf "rsync --stats -a -L -P \"${srcDir}/download.hub.txt\" \"qateam@${downloadDest1}:${destDir}/hub.txt\"\n" 1>&2
-printf "rsync --stats -a -L -P \"${srcDir}/download.hub.txt\" \"qateam@${downloadDest2}:${destDir}/hub.txt\"\n" 1>&2
+# printf "rsync --stats -a -L -P \"${srcDir}/download.hub.txt\" \"qateam@${downloadDest2}:${destDir}/hub.txt\"\n" 1>&2
 printf "rsync --stats -a -L -P \"${srcDir}/download.hub.txt\" \"qateam@${downloadDest3}:${destDir}/hub.txt\"\n" 1>&2
 rsync --stats -a -L -P "${srcDir}/download.hub.txt" "qateam@${downloadDest1}:${destDir}/hub.txt" \
   2>&1 | grep -v "X11 forwarding request" &
-rsync --stats -a -L -P "${srcDir}/download.hub.txt" "qateam@${downloadDest2}:${destDir}/hub.txt" \
+# rsync --stats -a -L -P "${srcDir}/download.hub.txt" "qateam@${downloadDest2}:${destDir}/hub.txt" \
   2>&1 | grep -v "X11 forwarding request"
 rsync --stats -a -L -P "${srcDir}/download.hub.txt" "qateam@${downloadDest3}:${destDir}/hub.txt" \
   2>&1 | grep -v "X11 forwarding request"
 wait
 printf "# successful rsync\n"