589a76d22ae4ba72f908f7854d15b61c53239120 hiram Tue Mar 4 14:47:43 2025 -0800 VGP update refs #34370 diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index 497d51d8f55..aaece5e2cb6 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -477,32 +477,37 @@ 9622 GCA_040955645.1_LycPic1.final.hap1 mammals 9622 GCA_040955705.1_LycPic1.final.hap2 mammals 9773 GCA_041834305.1_ASM4183430v1 mammals 3127111 GCA_042242105.1_fPemKlu1.hap1 fish 3352246 GCA_042242115.1_fArrGeo1.hap1 fish 3127111 GCA_042242125.1_fPemKlu1.hap2 fish 3352246 GCA_042242135.1_fArrGeo1.hap2 fish 9545 GCA_043159975.1_mMacNem.hap1 mammals 9545 GCA_043161795.1_mMacNem.hap2 mammals 394691 GCA_043250625.1_fSebFas1.pri fish 320637 GCA_043290065.1_mRhyPet1.hap2 mammals 320637 GCA_043290085.1_mRhyPet1.hap1 mammals 215367 GCA_043640875.1_fEnoArm2.hap2 fish 188568 GCA_043727835.1_ASM4372783v1 mammals 175524 GCA_043727955.1_ASM4372795v1 mammals +59477 GCA_043728065.1_ASM4372806v1 mammals +430492 GCA_043728145.1_ASM4372814v1 mammals +3030661 GCA_043748575.1_ASM4374857v1 mammals 258863 GCA_043748645.1_ASM4374864v1 mammals 249021 GCA_043880285.1_ASM4388028v1 mammals +2952509 GCA_043880425.1_ASM4388042v1 mammals +9414 GCA_043880595.1_ASM4388059v1 mammals 390378 GCA_044231645.1_SynOce1_v1.hap2 fish 390378 GCA_044231665.1_SynOce1_v1.hap1 fish 586865 GCA_044231675.1_ASM4423167v1 fish 586865 GCA_044231685.1_ASM4423168v1 fish 55135 GCA_044704955.1_sPriJap1.hap1 sharks 55135 GCA_044704965.1_sPriJap1.hap2 sharks 51906 GCA_045345405.1_bGuaGua1_haplotype_1 birds 252789 GCA_045345505.1_bMorGui1_haplotype_1 birds 252789 GCA_045345515.1_bMorGui1_haplotype_2 birds 182658 GCA_045362485.1_fLetNeb1.hap2 fish 182658 GCA_045362495.1_fLetNeb1.hap1 fish 264210 GCA_045363885.1_fPriTyp1.hap2 fish 264210 GCA_045363895.1_fPriTyp1.hap1 fish 44507 GCA_045364785.1_rPodExp1_haplotype_1 reptiles 1566151 GCA_045364795.1_bWilVid1_haplotype_1 birds @@ -721,30 +726,31 @@ 1090481 GCA_963454915.1_fGymMic1.1 fish 61862 GCA_963455305.1_mPleAur1.1 mammals 9731 GCA_963455315.2_mGloMel1.2 mammals 29065 GCA_963455335.1_mMarMar1.1 mammals 8103 GCA_963457625.1_fCycLum2.1 fish 90074 GCA_963457635.1_fMicVar1.1 fish 196075 GCA_963457725.1_fSprSpr1.1 fish 37598 GCA_963513975.1_bFriCoe1.1 birds 223862 GCA_963514005.1_sRajBra1.1 sharks 48171 GCA_963514085.1_fCheLab1.1 fish 426098 GCA_963514095.1_fEutGur1.1 fish 127875 GCA_963662255.1_bCinCin1.1 birds 94984 GCA_963691815.1_fEchVip8.1 fish 13677 GCA_963691925.1_fScoSco1.1 fish 29151 GCA_963692335.1_fOsmEpe2.1 fish +59473 GCA_963693515.1_mPipNat.pri mammals 27697 GCA_963854185.1_fSarPil1.1 fish 52904 GCA_963854745.1_fScoMax1.1 fish 473322 GCA_963921795.1_fNanAch1.1 fish 9209 GCA_963921805.1_bPhaCar2.1 birds 443714 GCA_963924005.1_fProBol1.1 fish 1192867 GCA_963924245.1_bChrRid1.1 birds 59485 GCA_963924515.1_mVesMur1.1 mammals 201961 GCA_963924565.1_kaAscAspe10.1 otherChordates 13151 GCA_963924665.1_mMicMin1.1 mammals 9742 GCA_963924675.1_mPhoPho1.1 mammals 8237 GCA_963924715.1_fThuThy2.1 fish 9886 GCA_963930665.1_mMunRee1.1_alternate_haplotype mammals 56723 GCA_963930695.1_fLabBer1.1 fish 28680 GCA_963932015.1_bAnaAcu1.1 birds 8915 GCA_963932225.1_bLarFus1.1 birds @@ -791,94 +797,102 @@ 9375 GCA_964194135.1_mTalEur1.hap1.1 mammals 57982 GCA_964194155.1_sCetMax3.hap1.1 sharks 57982 GCA_964194165.1_sCetMax3.hap2.1 sharks 77218 GCA_964194185.1_mRhiHip2.hap1.1 mammals 9375 GCA_964194205.1_mTalEur1.hap2.1 mammals 77218 GCA_964194215.1_mRhiHip2.hap2.1 mammals 31155 GCA_964194405.1_rVipBer3.hap2.1 reptiles 31155 GCA_964194415.1_rVipBer3.hap1.1 reptiles 1323832 GCA_964195595.1_bCalBor7.hap1.1 birds 109479 GCA_964195625.1_mMyoMys1.hap2.1 mammals 1323832 GCA_964196065.1_bCalBor7.hap2.1 birds 58319 GCA_964197995.1_fScaEry2.hap1.1 fish 7748 GCA_964198595.1_kcLamFluv1.1 otherChordates 119627 GCA_964199725.1_bLarMic1.1_alternate_haplotype birds 119627 GCA_964199755.1_bLarMic1.1 birds +8323 GCA_964204655.1_aTriCri1.1 amphibians 7725 GCA_964204865.1_kaStyClav1.hap1.1 otherChordates 7725 GCA_964204955.1_kaStyClav1.hap2.1 otherChordates 8348 GCA_964205295.1_aBomVar4.maternal.1 amphibians 8348 GCA_964205305.1_aBomVar4.paternal.1 amphibians 8843 GCA_964211785.1_bAnsAns1.hap2.1 birds 219593 GCA_964211795.1_bAytFer1.hap2.1 birds 219593 GCA_964211825.1_bAytFer1.hap1.1 birds 8843 GCA_964211835.1_bAnsAns1.hap1.1 birds 109481 GCA_964212025.1_mMyoNat1.hap2.1 mammals 109481 GCA_964212035.1_mMyoNat1.hap1.1 mammals 112232 GCA_964213995.1_sMusAst1.hap1.1 sharks 112232 GCA_964214025.1_sMusAst1.hap2.1 sharks 65482 GCA_964234715.1_rPodMel1.hap1.1 reptiles 65482 GCA_964234825.1_rPodMel1.hap2.1 reptiles 9123 GCA_964237395.1_bGalChl1.hap2.1 birds 9986 GCA_964237555.1_mOryCun1.1 mammals 9123 GCA_964237585.1_bGalChl1.hap1.1 birds 140042 GCA_964251985.1_rPodErh1.hap2.1 reptiles 140042 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GCF_004126475.1_mPhyDis1_v1.p mammals 89673 GCF_004126475.2_mPhyDis1.pri.v3 mammals @@ -1043,37 +1057,39 @@ 415032 GCF_036250125.1_bDixPip1.hap1 birds 9838 GCF_036321535.1_mCamDro1.pat mammals 7792 GCF_036365525.1_sHetFra1.hap1 sharks 8790 GCF_036370855.1_bDroNov1.hap1 birds 7924 GCF_036373705.1_fAmiCal2.hap1 fish 48849 GCF_036417665.1_bPasDom1.hap1 birds 2696672 GCF_036417845.1_bAptMan1.hap1 birds 59482 GCF_036850765.1_mSacBil1_pri_phased_curated mammals 249018 GCF_036850995.1_mSacLep1_pri_phased_curated mammals 1343680 GCF_036971445.1_sNarBan1.hap1 sharks 372321 GCF_036971685.1_bPatFas1.hap2 birds 678569 GCF_037157495.1_bLatDis1.hap1 birds 38937 GCF_037176765.1_rAnoSag1.mat reptiles 7897 GCF_037176945.1_fLatCha1.pri fish 9541 GCF_037993035.1_T2T-MFA8v1.0 primates +109706 GCF_039877785.1_fChaTrf1.hap1 fish 82174 GCF_039906515.1_mPseCra1.hap1 mammals 8801 GCF_040807025.1_bStrCam1.hap1 birds 7769 GCF_040869285.1_UKY_Mglu_1.0 otherChordates 752182 GCF_040937935.1_aHypRig1.pri amphibians 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