7e008fe9bc0fd5adbba182fd74adfc4b8fbd5fca hiram Thu Dec 4 13:46:14 2025 -0800 no need to define HLTOGAannotvsHg38v1 here, it is at the top level refs #35776 diff --git src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra index 8c32e41420b..9f6344c9ec4 100644 --- src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra +++ src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra @@ -379,44 +379,30 @@ priority 1 track epdNewPromoterNonCoding shortLabel EPDnew NC v1 longLabel ncRNA promoters from EPDnewNC mouse version 001 parent epdNew on bigDataUrl /gbdb/$D/bbi/epdNewMouseNc001.$D.bb dataVersion EPDNewNC Mouse Version 001 (August 2019) url https://epd.epfl.ch/cgi-bin/get_doc?db=mmNCEpdNew&format=genome&entry=$$ color 180,0,134 priority 2 include dbSnpArchiveMm10.ra include reMap.ra -# TOGA default annotation for hg38 -track HLTOGAannotvsHg38v1 -shortLabel TOGA hg38 annotations -longLabel TOGA annotations using human hg38 as reference -group genes -priority 2 -visibility pack -itemRgb on -type bed 12 - -searchTable HLTOGAannotvsHg38v1 -searchType bed -searchMethod fuzzy - track allGaps shortLabel All Gaps longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps group map visibility dense type bigBed 3 bigDataUrl /gbdb/mm10/bbi/allGaps.bb html allGaps track vistaEnhancersBb shortLabel VISTA Enhancers longLabel VISTA Enhancers group regulation url https://enhancer.lbl.gov/vista/element?vistaId=$$ type bigBed 9 +