16311d16d3c24281f59bcba6d8c4e6b548cd6ad1
hiram
  Tue Dec 2 12:09:52 2025 -0800
on advice from Terence and NCBI fixup the track label on gene models track that is not from RefSeq

diff --git src/hg/utils/automation/asmHubTrackDb.sh src/hg/utils/automation/asmHubTrackDb.sh
index f39f93e0ee3..ba12649ff75 100755
--- src/hg/utils/automation/asmHubTrackDb.sh
+++ src/hg/utils/automation/asmHubTrackDb.sh
@@ -693,36 +693,40 @@
 
 # may or may not have a searchTrix for ncbiGene, assume none
 searchTrix=""
 # check to see if there is a index for ncbiGene
 if [ -s ${buildDir}/trackData/ncbiGene/$asmId.ncbiGene.ix ]; then
   searchTrix="
 searchTrix ixIxx/$asmId.ncbiGene.ix"
 fi
 
 
 if [ -s ${buildDir}/trackData/ncbiGene/$asmId.ncbiGene.bb ]; then
 rm -f $buildDir/bbi/${asmId}.ncbiGene.bb
 rm -f $buildDir/ixIxx/${asmId}.ncbiGene.ix
 rm -f $buildDir/ixIxx/${asmId}.ncbiGene.ixx
 rm -f ${buildDir}/genes/${asmId}.ncbiGene.gtf.gz
-export longLabel="Gene models submitted to NCBI"
-export shortLabel="Gene models"
-if [ "$asmType" = "refseq" ]; then
-  longLabel="RefSeq gene predictions from NCBI"
-  shortLabel="NCBI RefSeq"
-fi
+export longLabel="Gene models submitted to GenBank, ENA, DDBJ"
+export shortLabel="NCBI GenBank"
+# Note: 2025-12-02 - this isn't valid, since we are in this section due
+#                    to there being no NCBI RefSeq track.  Even though this
+#                    is a RefSeq assembly, these are other gene models, not
+#                    from RefSeq
+# if [ "$asmType" = "refseq" ]; then
+#   longLabel="RefSeq gene predictions from NCBI"
+#   shortLabel="NCBI RefSeq"
+# fi
 if [ -s ${buildDir}/trackData/ncbiGene/${asmId}.ncbiGene.gtf.gz ]; then
   mkdir -p $buildDir/genes
   ln -s ../trackData/ncbiGene/${asmId}.ncbiGene.gtf.gz $buildDir/genes/${asmId}.ncbiGene.gtf.gz
 fi
 ln -s ../trackData/ncbiGene/$asmId.ncbiGene.bb $buildDir/bbi/${asmId}.ncbiGene.bb
 if [ -s  $buildDir/ixIxx/${asmId}.ncbiGene.ix ]; then
   ln -s ../trackData/ncbiGene/$asmId.ncbiGene.ix $buildDir/ixIxx/${asmId}.ncbiGene.ix
   ln -s ../trackData/ncbiGene/$asmId.ncbiGene.ixx $buildDir/ixIxx/${asmId}.ncbiGene.ixx
 fi
   printf "track ncbiGene
 longLabel $longLabel
 shortLabel $shortLabel
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 color 0,80,150
 altColor 150,80,0