af19b68a0dc2b8e4057fe762f1805b060e38ed77
hiram
  Thu Sep 10 21:51:33 2026 -0700
updating RepeatMasker and RepeatModeler to next version refs #38337

diff --git src/hg/utils/automation/doRepeatModeler.pl src/hg/utils/automation/doRepeatModeler.pl
index 1ae074fbb82..bf31347f385 100755
--- src/hg/utils/automation/doRepeatModeler.pl
+++ src/hg/utils/automation/doRepeatModeler.pl
@@ -2,31 +2,31 @@
 
 # DO NOT EDIT the /cluster/bin/scripts copy of this file --
 # edit ~/kent/src/hg/utils/automation/doRepeatModeler.pl instead.
 
 use Getopt::Long;
 use warnings;
 use strict;
 use Carp;
 use FindBin qw($Bin);
 use lib "$Bin";
 use HgAutomate;
 use HgRemoteScript;
 use HgStepManager;
 
 # Hardcoded command path:
-my $RepeatModelerPath = "/hive/data/outside/RepeatModeler-2.0.7";
+my $RepeatModelerPath = "/hive/data/outside/RepeatModeler-2.0.9";
 my $RepeatModeler = "$RepeatModelerPath/RepeatModeler";
 my $BuildDatabase = "$RepeatModelerPath/BuildDatabase";
 # configured to consume one entire ku machine node
 my $threadCount = "-threads 32";
 my $parasolOpts = "-cpu=32 -ram=128g";
 # Option defaults
 my $bigClusterHub = 'hgwdev';
 my $workhorse = "hgwdev";
 my $defaultWorkhorse = 'hgwdev';
 
 # Option variable names, both common and peculiar to this script:
 use vars @HgAutomate::commonOptionVars;
 use vars @HgStepManager::optionVars;
 use vars qw/
     $opt_buildDir