6b57700763a45c9826c241399e125d1b4c25b8cb
hiram
  Sun Dec 7 22:08:27 2025 -0800
everything for toga2 shoiuld be in /TOGAv2/ directory under gbdb refs #35776

diff --git src/hg/makeDb/trackDb/toga2.ra src/hg/makeDb/trackDb/toga2.ra
index f4cd05eb4a9..b0173d30cfb 100644
--- src/hg/makeDb/trackDb/toga2.ra
+++ src/hg/makeDb/trackDb/toga2.ra
@@ -1,163 +1,163 @@
 track TOGAv2
 shortLabel TOGA V2
 longLabel TOGA 2.0 annotations, multiple reference
 group genes
 visibility hide
 type bigBed 12 +
 superTrack on
 html TOGAv2
 
 #################### 4 mammals
     track HLTOGAannotvsHg38v2
     parent TOGAv2
     shortLabel TOGA2 human annotations
     longLabel TOGA 2.0 annotations using human hg38 as reference
     group genes
     priority 3
     visibility pack
     itemRgb on
     type bigBed 12 +
-    bigDataUrl /gbdb/$D/TOGAvHg38v2/HLTOGAannotVsHg38v2.bb
+    bigDataUrl /gbdb/$D/TOGAv2/TOGAvHg38v2/HLTOGAannotVsHg38v2.bb
     labelFields name
     searchIndex name
-    searchTrix /gbdb/$D/TOGAvHg38v2/HLTOGAannotVsHg38v2.ix
-    decorator.default.bigDataUrl /gbdb/$D/TOGAvHg38v2/HLTOGAannotVsHg38v2.decorator.bb
+    searchTrix /gbdb/$D/TOGAv2/TOGAvHg38v2/HLTOGAannotVsHg38v2.ix
+    decorator.default.bigDataUrl /gbdb/$D/TOGAv2/TOGAvHg38v2/HLTOGAannotVsHg38v2.decorator.bb
     decorator.default.maxLabelBases 5000
     html TOGAv2
 
     track HLTOGAannotvsMm10v2
     parent TOGAv2
     shortLabel TOGA2 mouse annotations
     longLabel TOGA 2.0 annotations using mouse mm10 as reference
     group genes
     priority 4
     visibility pack
     itemRgb on
     type bigBed 12 +
-    bigDataUrl /gbdb/$D/TOGAvMm10v2/HLTOGAannotVsMm10v2.bb
+    bigDataUrl /gbdb/$D/TOGAv2/TOGAvMm10v2/HLTOGAannotVsMm10v2.bb
     labelFields name
     searchIndex name
-    searchTrix /gbdb/$D/TOGAvMm10v2/HLTOGAannotVsMm10v2.ix
-    decorator.default.bigDataUrl /gbdb/$D/TOGAvMm10v2/HLTOGAannotVsMm10v2.decorator.bb
+    searchTrix /gbdb/$D/TOGAv2/TOGAvMm10v2/HLTOGAannotVsMm10v2.ix
+    decorator.default.bigDataUrl /gbdb/$D/TOGAv2/TOGAvMm10v2/HLTOGAannotVsMm10v2.decorator.bb
     decorator.default.maxLabelBases 5000
     html TOGAv2
 
     track HLTOGAannotvsHLbosTau10v2
     parent TOGAv2
     shortLabel TOGA2 cow annotations
     longLabel TOGA 2.0 annotations using cow bosTau10 as reference
     group genes
     priority 4
     visibility pack
     itemRgb on
     type bigBed 12 +
-    bigDataUrl /gbdb/$D/TOGAvBosTau10v2/HLTOGAannotVsHLbosTau10v2.bb
+    bigDataUrl /gbdb/$D/TOGAv2/TOGAvBosTau10v2/HLTOGAannotVsHLbosTau10v2.bb
     labelFields name
     searchIndex name
-    searchTrix /gbdb/$D/TOGAvBosTau10v2/HLTOGAannotVsHLbosTau10v2.ix
-    decorator.default.bigDataUrl /gbdb/$D/TOGAvBosTau10v2/HLTOGAannotVsHLbosTau10v2.decorator.bb
+    searchTrix /gbdb/$D/TOGAv2/TOGAvBosTau10v2/HLTOGAannotVsHLbosTau10v2.ix
+    decorator.default.bigDataUrl /gbdb/$D/TOGAv2/TOGAvBosTau10v2/HLTOGAannotVsHLbosTau10v2.decorator.bb
     decorator.default.maxLabelBases 5000
     html TOGAv2
 
     track HLTOGAannotvsHLeleMaxInd3Av2
     parent TOGAv2
     shortLabel TOGA2 elephant annotations
     longLabel TOGA 2.0 annotations using elephant GCF_024166365.1_mEleMax1 as reference
     group genes
     priority 5
     visibility pack
     itemRgb on
     type bigBed 12 +
-    bigDataUrl /gbdb/$D/TOGAvGCF_024166365.1v2/HLTOGAannotVsHLeleMaxInd3Av2.bb
+    bigDataUrl /gbdb/$D/TOGAv2/TOGAvGCF_024166365.1v2/HLTOGAannotVsHLeleMaxInd3Av2.bb
     labelFields name
     searchIndex name
-    searchTrix /gbdb/$D/TOGAvGCF_024166365.1v2/HLTOGAannotVsHLeleMaxInd3Av2.ix
-    decorator.default.bigDataUrl /gbdb/$D/TOGAvGCF_024166365.1v2/HLTOGAannotVsHLeleMaxInd3Av2.decorator.bb
+    searchTrix /gbdb/$D/TOGAv2/TOGAvGCF_024166365.1v2/HLTOGAannotVsHLeleMaxInd3Av2.ix
+    decorator.default.bigDataUrl /gbdb/$D/TOGAv2/TOGAvGCF_024166365.1v2/HLTOGAannotVsHLeleMaxInd3Av2.decorator.bb
     decorator.default.maxLabelBases 5000
     html TOGAv2
 
 #################### 5 birds
     track HLTOGAannotvsHLgalGal7v2
     parent TOGAv2
     shortLabel TOGA2 chicken annotations
     longLabel TOGA 2.0 annotations using chicken galGal7 as reference
     group genes
     priority 2
     visibility pack
     itemRgb on
     type bigBed 12 +
     bigDataUrl /gbdb/$D/TOGAv2/TOGAvGalGal7/HLTOGAannotVsHLgalGal7v2.bb
     labelFields name
     searchIndex name
     searchTrix /gbdb/$D/TOGAv2/TOGAvGalGal7/HLTOGAannotVsHLgalGal7v2.ix
     decorator.default.bigDataUrl /gbdb/$D/TOGAv2/TOGAvGalGal7/HLTOGAannotVsHLgalGal7v2.decorator.bb
     decorator.default.maxLabelBases 5000
     html TOGAv2
 
     track HLTOGAannotvsHLtaeGut5v2
     parent TOGAv2
     shortLabel TOGA2 zebrafinch annotations
     longLabel TOGA 2.0 annotations using zebrafinch taeGut5 as reference
     group genes
     priority 3
     visibility pack
     itemRgb on
     type bigBed 12 +
     bigDataUrl /gbdb/$D/TOGAv2/TOGAvGCF_003957565.2v2/HLTOGAannotVsHLtaeGut5v2.bb
     labelFields name
     searchIndex name
     searchTrix /gbdb/$D/TOGAv2/TOGAvGCF_003957565.2v2/HLTOGAannotVsHLtaeGut5v2.ix
     decorator.default.bigDataUrl /gbdb/$D/TOGAv2/TOGAvGCF_003957565.2v2/HLTOGAannotVsHLtaeGut5v2.decorator.bb
     decorator.default.maxLabelBases 5000
     html TOGAv2
 
     track HLTOGAannotvsHLrisTri2v2
     parent TOGAv2
     shortLabel TOGA2 kittiwake annotations
     longLabel TOGA 2.0 annotations using Black-legged kittiwake HLrisTri2 as reference
     group genes
     priority 4
     visibility pack
     itemRgb on
     type bigBed 12 +
     bigDataUrl /gbdb/$D/TOGAv2/TOGAvGCF_028500815.1v2/HLTOGAannotVsHLrisTri2v2.bb
     labelFields name
     searchIndex name
     searchTrix /gbdb/$D/TOGAv2/TOGAvGCF_028500815.1v2/HLTOGAannotVsHLrisTri2v2.ix
     decorator.default.bigDataUrl /gbdb/$D/TOGAv2/TOGAvGCF_028500815.1v2/HLTOGAannotVsHLrisTri2v2.decorator.bb
     decorator.default.maxLabelBases 5000
     html TOGAv2
 
     track HLTOGAannotvsHLcorHaw3v2
     parent TOGAv2
     shortLabel TOGA2 crow annotations
     longLabel TOGA 2.0 annotations using Hawaiian crow HLcorHaw3 as reference
     group genes
     priority 5
     visibility pack
     itemRgb on
     type bigBed 12 +
     bigDataUrl /gbdb/$D/TOGAv2/TOGAvGCF_020740725.1v2/HLTOGAannotVsHLcorHaw3v2.bb
     labelFields name
     searchIndex name
     searchTrix /gbdb/$D/TOGAv2/TOGAvGCF_020740725.1v2/HLTOGAannotVsHLcorHaw3v2.ix
     decorator.default.bigDataUrl /gbdb/$D/TOGAv2/TOGAvGCF_020740725.1v2/HLTOGAannotVsHLcorHaw3v2.decorator.bb
     decorator.default.maxLabelBases 5000
     html TOGAv2
 
     track HLTOGAannotvsHLdroNov3v2
     parent TOGAv2
     shortLabel TOGA2 emu annotations
     longLabel TOGA 2.0 annotations using emu HLdroNov3 as reference
     group genes
     priority 6
     visibility pack
     itemRgb on
     type bigBed 12 +
     bigDataUrl /gbdb/$D/TOGAv2/TOGAvGCF_036370855.1v2/HLTOGAannotVsHLdroNov3v2.bb
     labelFields name
     searchIndex name
     searchTrix /gbdb/$D/TOGAv2/TOGAvGCF_036370855.1v2/HLTOGAannotVsHLdroNov3v2.ix
     decorator.default.bigDataUrl /gbdb/$D/TOGAv2/TOGAvGCF_036370855.1v2/HLTOGAannotVsHLdroNov3v2.decorator.bb
     decorator.default.maxLabelBases 5000
     html TOGAv2