682ab35733635575cc4c65b1f639e5be9f0080f2 jcasper Sun Aug 2 01:11:14 2026 -0700 Installing updated hg.conf files from UCSC servers diff --git confs/hgwdev.hg.conf confs/hgwdev.hg.conf index a502b3dced2..0ca736c4bd4 100644 --- confs/hgwdev.hg.conf +++ confs/hgwdev.hg.conf @@ -325,31 +325,31 @@ #httpsCertCheckDomainExceptions=noHardwiredExceptions *.upf.edu *.igh.cnrs.fr *.med.umich.edu # Log visible tracks to error_log trackLog=on # location of CRAM reference sequences cramRef=../userdata/cramCache #showTableCache=tableList # Make a custom track with BLAT results #useBlatBigPsl=on #JKSQL_TRACE=on # #This following turns on short links for hgSession, allowing the redirect. -#hgSession.shortLink=on +hgSession.shortLink=on # Separate directory for files that belong to saved sessions (hgSession). # The path must be absolute (starts with /). # This directory must be on the same filesystem as trash/ so hard links work. # The purpose of this directory is to allow automated cleaning of old files # from trash/ while keeping saved session files safe in a different location. sessionDataDir=/data/apache/userdata/sessions sessionDataDirOld=/data/apache/userdata # Name prefix of 31 separate databases (one for each day of month, on same # server as customTrash, using customTracks.* profile) for custom track # database tables that belong to users' saved sessions, analogous to # sessionDataDir setting for saved session files. # The databases must be named as this prefix followed by {01, 02, 03, ... 31}. # For example, if the value is "customData" then the databases are named @@ -486,45 +486,44 @@ # Enables genark hubs to appear in assembly dropdowns for hgConvert/hgLiftOver genarkLiftOver=on # Enables the gear and x icon for hgTracks #greyBarIcons=on # very experimental, only on hgwdev: support for an embedded IGV track, see #36337 showIgv=on # Enables approved hgLogin redirect #login.approvedReturn=https://genome-preview.ucsc.edu/ # Enables single path loading for bigBed. Also, affects bigGenePred and bigPsl. #bigBedOnePath=on -######## enables liftRequest functions: -chainFileRequestEmail=chain-file-request-group@ucsc.edu -apiFromEmail=genome-www@soe.ucsc.edu - # calculate GC track on the fly gcOnTheFly=on # allow the track to appear even if gc5Base or gc5BaseBw are already there gcOnTheFlyCoExist=off # allow most tracks to have an override color that ignores trackDb and the item coloring showColorPicker=on # Show chromosome aliases on hgTracks showAliases=on +# Link from the Convert page to the alignment request page, refs #37973 +showLiftRequest=on + # Enable/disable myVariants feature doMyVariants=on # Set a limit on how many IP addresses can use the same hguid before a forced captcha check, see #37494 hguidIpTracking.enabled=on bottleneck.host=hgwdev bottleneck.port=17776 # Ordered comma-separated list of genePred tables tried when resolving " exon " searches. # First table with a matching gene symbol wins. Remove or reorder to suit the assembly. geneTracks=ncbiRefSeqSelect,knownGene,ncbiRefSeq,ncbiRefSeqHistorical # Allow changing of item color via right click canColorItems=on