faffaf6750cf5492f3bd779a8e2d3fe4116e24d6 jnavarr5 Tue Jul 28 14:53:49 2026 -0700 Documenting the codonTable genomes.txt setting on the trackDb hub settings page and the track hub help page, with the changes page now linking to the new settings entry, refs #16550 diff --git src/hg/htdocs/goldenPath/help/trackDb/changes.html src/hg/htdocs/goldenPath/help/trackDb/changes.html index d0a32a14d8c..0378697289f 100755 --- src/hg/htdocs/goldenPath/help/trackDb/changes.html +++ src/hg/htdocs/goldenPath/help/trackDb/changes.html @@ -36,31 +36,31 @@
This document summarizes the changes to the UCSC Genome Browser Hub TrackDb specification.
| Date | Track Types | Link to Doc | Change | |
|---|---|---|---|---|
| 2026-07-08 | genomes.txt setting | -codonTable | +codonTable | New codonTable genome-stanza setting (an assembly hub
genomes.txt setting, not a track setting) assigns NCBI genetic
codes to individual sequences for amino acid display, e.g.
codonTable default=1 NC_017929.1=13. Affects the base position
track three-frame translation, codon-colored tracks such as gene
predictions, and details pages. Sequences named chrM/chrMT still default to
the vertebrate mitochondrial code. |
| 2026-06-02 | bigBed, bigGenePred | colorFields | New colorFields setting adds a Color by: dropdown to the
track controls page, letting users switch among multiple pre-computed color schemes
stored as extra bigBed fields containing R,G,B strings.
|