48c7f26c5ca708ef3ad3b5ffd9b4e37d53b87846 jnavarr5 Thu Aug 21 12:16:39 2025 -0700 Adding Jonathan's suggestions for acknowledgements, refs #31812 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 00a74c81408..3a300e5e8ca 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -84,32 +84,33 @@ <img src="../images/newsArchImages/MaveDB_BRCA1_exon_19.png" alt="MaveDB heatmap and alignment tracks for the BRCA1 exon 19" width='75%'> <p class="gbsCaption"> <em>Genome Browser screenshot of BRCA1 exon 19 showing the alignment and heatmap tracks.</em> </p></a> </div> <p> Hover-over each item in the heatmap to see the consequence of substituting invididual amino acids within the genome with alternatives. Score ranges vary among experiments, but each is presented with the highest scores in <span style="color: #FF0000; font-weight: bold;">red</span>, the lowest scores in <span style="color: #0000FF; font-weight: bold;">blue</span>, and scores at the midpoint between the two in <span style="color: #C0C0C0; font-weight: bold;">silver</span>. Higher scores correspond to a higher enrichment level for that variant compared to others in the experiment set. </p> <p> -We would like to thank MaveDB for making this data publicly available. We would also like to thank -Jonathan Casper and Jairo Navarro for the creation and release of the Genome Browser tracks.</p> +We would like to thank Jeremy Arbesfeld and the MaveDB team for making this data publicly +available. We would also like to thank Melissa Cline, Jonathan Casper, and Jairo Navarro for the +creation and release of the Genome Browser tracks.</p> <a name="081125"></a> <h2>Aug. 11, 2025 CLS Long-read RNA transcripts track for hg38 and mm10</h2> <p> New Capture long-seq (CLS) long-read lncRNAs tracks are available for <a href="/cgi-bin/hgTrackUi?db=hg38&position=default&g=clsLongReadRnaTrack" target="_blank">hg38</a> and <a href="/cgi-bin/hgTrackUi?db=mm10&position=default&g=clsLongReadRnaTrack" target="_blank">mm10</a>. These tracks represent the results of targeted long-read RNA sequencing aimed at identifying lowly expressed lncRNAs. The data is comprised of the capture target regions, the reads, and transcript models organized in the following way:</p> <ul> <li><b>Targets:</b> Targeted RNA capture regions</li> <li><b>Models:</b> Transcript models generated from reads and merging</li> <li><b>Sample models:</b> Transcript models by sample in which they were observed</li> <li><b>Per-experiment reads:</b> Read mappings per experiment</li> <li><b>Per-experiment Models:</b> Transcript models generated from the experiments</li>