5428fe6145c9d7971704b42e2945fa34978f59c2
jnavarr5
Fri Oct 24 10:49:47 2025 -0700
Accidentally removed the Decipher tracks from hgwdev, refs #36529
diff --git src/hg/makeDb/trackDb/human/decipher.ra src/hg/makeDb/trackDb/human/decipher.ra
index 1f60590ecca..fd13f4841e7 100644
--- src/hg/makeDb/trackDb/human/decipher.ra
+++ src/hg/makeDb/trackDb/human/decipher.ra
@@ -1,22 +1,21 @@
track decipherContainer
superTrack on
shortLabel DECIPHER
longLabel DECIPHER
cartVersion 7
group phenDis
-pennantIcon Updated red ../goldenPath/newsarch.html#091925 "Added the DDG2P track Sep. 19, 2025"
track decipher
priority 1
shortLabel DECIPHER CNVs
longLabel DECIPHER CNVs
group phenDis
visibility pack
type bigBed 9 +
itemRgb on
tableBrowser off knownCanonToDecipher knownToDecipher decipherRaw
bigDataUrl /gbdb/$D/decipher/decipherCnv.bb
url https://www.deciphergenomics.org/patient/$$
urlLabel Decipher Patient View:
filter.size 0
filterByRange.size on
@@ -48,39 +47,39 @@
priority 3
parent decipherContainer
type bigBed 9 +
shortLabel DECIPHER Population CNVs
longLabel DECIPHER: Population CNVs
bigDataUrl /gbdb/$D/decipher/population_cnv.bb
visibility pack
mouseOver Position: $chrom:${chromStart}-${chromEnd}
Type of CNV: $type
Frequency of CNV: $frequency
Number of Observations: $observations
Sample Size of Study: $sample_size
html decipherContainer
searchIndex name
noScoreFilter on
filterValues.type loss,gain,del/dup
filter.sample_size 0
track ddg2p
+ release beta,public
parent decipherContainer
shortLabel DDG2P
longLabel Developmental Disorders Gene2Phenotype (DDG2P)
type bigBed 9 +
bigDataUrl /gbdb/$D/ddg2p/ddg2p.bb
visibility pack
mouseOver G2P ID: ${g2p_id}
Variant Consequence: ${variant_consequence}
Disease Name: ${disease_name}
Pubmed IDs: ${publications}
Molecular Mechanism: ${molecular_mechanism}
Allelic Requirements: ${allelic_requirement}
Date of Last Review: ${date_of_last_review}
html decipherContainer
- pennantIcon New red ../goldenPath/newsarch.html#091925 "Released Sep. 19, 2025"
searchTable decipher
searchMethod exact
searchType bigBed
searchTable decipherPopulation
searchMethod exact
searchType bigBed
searchName decipherId
searchTable decipher
termRegex [0-9]+
searchType bed
searchPriority 50