3ff911e2af586e1e45944813cef5138de1421777
jnavarr5
  Thu Oct 23 14:00:10 2025 -0700
Updating the URL to the Orphanet data since Ensembl retired the US West server, no Redmine.

diff --git src/hg/utils/otto/orphanet/parseOrphadata.py src/hg/utils/otto/orphanet/parseOrphadata.py
index 6d4d8feb963..f9d616a7d75 100755
--- src/hg/utils/otto/orphanet/parseOrphadata.py
+++ src/hg/utils/otto/orphanet/parseOrphadata.py
@@ -209,31 +209,31 @@
             # References - Ensembl, OMIM, HGNC
             refList = gene.find('ExternalReferenceList')
             geneDict['externalRefList'] = []
 
             for ref in refList.iter("ExternalReference"):  # iterate through reference list
                 refName = ref.find("Source").text
                 refID = ref.find("Reference").text
 
                 # Find Ensembl reference
                 if ref.find("Source").text.lower() == "ensembl":
                     ensemblId = ref.find("Reference").text
                     geneDict['ensembl'] = str(ensemblId)
 
                     # Grab the Ensembl reference link
                     geneDict[
-                        'ensemblLink'] = 'https://uswest.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=' + ensemblId
+                        'ensemblLink'] = 'https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=' + ensemblId
 
                     # Capture ensembl info
                     if ensemblId in ensemblDict.keys():
                         geneDict['chr'] = ensemblDict[ensemblId].chr
                         geneDict['start'] = ensemblDict[ensemblId].start
                         geneDict['end'] = ensemblDict[ensemblId].end
                         geneDict['strand'] = ensemblDict[ensemblId].strand
 
                 # Find OMIM reference
                 if refName.lower() == 'omim':
                     geneDict['OMIM'] = str(refID)
 
                 # Find HGNC reference
                 if refName.lower() == 'hgnc':
                     geneDict['HGNC'] = str(refID)