487b850e5dbc6e21882e790614aaecfde9236171 lrnassar Thu Jun 19 13:21:35 2025 -0700 Feedback from CR, refs #35930 diff --git src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml index 502b7f2dfc7..7b53228faa2 100644 --- src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml +++ src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml @@ -2869,32 +2869,32 @@ <DIV class="logo"><span class="types bigWig"></span> <div class="format"><code>logo on</code></div> <P>Enables <a target="_blank" href="https://kundajelab.github.io/dynseq-pages/"> dynseq display</a>, which graphs the signal as reference base nucleotide letters with their heights equal to the signal value within the bigWig track. If not sufficiently zoomed in, the bigWig will revert to bars instead of letters by default. See a working example of the <code>logo</code> dynseq display on the <a href="../bigWig.html#Ex4" target="_blank">bigWig</a> help page.</p> <P><B>Example:</B></P> <pre> logo on</pre> </DIV> <DIV class="logoMaf"><span class="types bigWig bigMaf"></span> <div class="format"><code>logoMaf <url/relativePath></code></div> <P>The argument to logoMaf is the path to a MAF alignment (either a table or bigMaf). - If set and zoomed into base level the wiggle will be drawn as a sequence logo calculated - by counting the number of each nucleotide aligned to that base which will be scaled by + If set and zoomed into base level, the wiggle will be drawn as a sequence logo calculated + by counting the number of each nucleotide aligned to that base, which will be scaled by the value in the wiggle.</p> <P><B>Example:</B></P> <pre> logoMaf https://hgdownload.soe.ucsc.edu/goldenPath/hg38/multiz470way/multiz470way.bigMaf</pre> </DIV> <DIV class="mouseOverFunction"><span class="types wig bigWig bedGraph"></span> <div class="format"><code>mouseOverFunction <noAverage></code></div> <P>Limit mouse over value display to only display the fundamental values without any averaging of multiple data points. Display will show "zoom in to see values" when fundamental individual values can not be shown. Useful for tracks where averaging values together is not a valid operation.</P> <P><B>Example:</B></P> <pre> mouseOverFunction noAverage</pre> </DIV>