02782ec9c99ef7f54699068afbc902e7dedccb93
lrnassar
Sun Jun 14 00:34:26 2026 -0700
lrSv: format the lrSvAll merged-track mouseOver as multi-line HTML. refs #36258
Replace the inline mouseOver with bold-labeled lines (Var / SV len / Ins len /
Sources / AF range / AC), in both the generated lrSvAll.ra and the
lrSvMergeAll.py generator that writes it, so a future merge regeneration
reproduces the same format.
diff --git src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py
index 1c20d1223eb..17e307b78c8 100644
--- src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py
+++ src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py
@@ -493,32 +493,33 @@
# The original label (with commas) still appears on the detail page via
# the autoSql field descriptions.
src_parts = [f"{db['key']}|{db['label'].replace(',', '')}" for db in dbs]
with open(out_path, "w") as f:
f.write("# AUTO-GENERATED by ~/kent/src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py\n")
f.write("# Do not edit by hand - re-run the merge script and re-commit.\n\n")
f.write(" track lrSvAll\n")
f.write(" parent lrSv\n")
f.write(" bigDataUrl /gbdb/$D/lrSv/lrSvAll.bb\n")
f.write(" shortLabel All LR SVs merged\n")
f.write(" longLabel All long-read SVs merged across subtracks "
"by exact position, with per-database AC\n")
f.write(" type bigBed 9 +\n")
f.write(" itemRgb on\n")
f.write(" visibility pack\n")
- f.write(" mouseOver $name ($svType) svLen=$svLen insLen=$insLen "
- "sources=$sources AF=$minAF-$maxAF AC=$AC\n")
+ f.write(" mouseOver Var: $name ($svType)
SV len: $svLen"
+ "
Ins len: $insLen
Sources: $sources"
+ "
AF range: $minAF-$maxAF
AC: $AC\n")
# Source filter
f.write(" filterValues.sources " + ",".join(src_parts) + "\n")
f.write(" filterType.sources multipleListOr\n")
f.write(" filterLabel.sources Source Database\n")
# SV type
f.write(" filterValues.svType DEL,INS,DUP,INV,CPX,MIXED,INSDEL,"
"CNV,BND,TRA,MEI\n")
f.write(" filterType.svType multipleListOr\n")
f.write(" filterLabel.svType SV Type\n")
# Range filters
f.write(" filter.svLen 0:30000000\n")
f.write(" filterByRange.svLen on\n")
f.write(" filterLabel.svLen SV Length (bp)\n")
f.write(" filter.insLen 0:600000\n")
f.write(" filterByRange.insLen on\n")