02782ec9c99ef7f54699068afbc902e7dedccb93 lrnassar Sun Jun 14 00:34:26 2026 -0700 lrSv: format the lrSvAll merged-track mouseOver as multi-line HTML. refs #36258 Replace the inline mouseOver with bold-labeled lines (Var / SV len / Ins len / Sources / AF range / AC), in both the generated lrSvAll.ra and the lrSvMergeAll.py generator that writes it, so a future merge regeneration reproduces the same format. diff --git src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py index 1c20d1223eb..17e307b78c8 100644 --- src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py +++ src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py @@ -493,32 +493,33 @@ # The original label (with commas) still appears on the detail page via # the autoSql field descriptions. src_parts = [f"{db['key']}|{db['label'].replace(',', '')}" for db in dbs] with open(out_path, "w") as f: f.write("# AUTO-GENERATED by ~/kent/src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py\n") f.write("# Do not edit by hand - re-run the merge script and re-commit.\n\n") f.write(" track lrSvAll\n") f.write(" parent lrSv\n") f.write(" bigDataUrl /gbdb/$D/lrSv/lrSvAll.bb\n") f.write(" shortLabel All LR SVs merged\n") f.write(" longLabel All long-read SVs merged across subtracks " "by exact position, with per-database AC\n") f.write(" type bigBed 9 +\n") f.write(" itemRgb on\n") f.write(" visibility pack\n") - f.write(" mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen " - "sources=$sources AF=$minAF-$maxAF AC=$AC\n") + f.write(" mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen" + "<br><b>Ins len</b>: $insLen<br><b>Sources</b>: $sources" + "<br><b>AF range</b>: $minAF-$maxAF<br><b>AC</b>: $AC\n") # Source filter f.write(" filterValues.sources " + ",".join(src_parts) + "\n") f.write(" filterType.sources multipleListOr\n") f.write(" filterLabel.sources Source Database\n") # SV type f.write(" filterValues.svType DEL,INS,DUP,INV,CPX,MIXED,INSDEL," "CNV,BND,TRA,MEI\n") f.write(" filterType.svType multipleListOr\n") f.write(" filterLabel.svType SV Type\n") # Range filters f.write(" filter.svLen 0:30000000\n") f.write(" filterByRange.svLen on\n") f.write(" filterLabel.svLen SV Length (bp)\n") f.write(" filter.insLen 0:600000\n") f.write(" filterByRange.insLen on\n")