ae2a62a18bf9750819f17f8f2237b1f7b1b9911f
lrnassar
  Sat Jun 13 10:48:41 2026 -0700
lrSv: comment out kwanhoSv and remove all searchIndex settings. refs #36258

Per ticket: hold the preliminary/unpublished Kim PD brain track (kwanhoSv) off
dev/alpha until publication (commented out; bigBed/.as/converter/makeDoc kept),
and remove the searchIndex name settings that were added by mistake. searchIndex
removed from colorsDbSv and lrSv1kLin in lrSv.ra, from lrSvAll.ra, and from the
lrSvMergeAll.py generator so future merges do not re-add it. The pending lrSvAll
rebuild will drop KimPD from databases.tsv / the merged track.

diff --git src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py
index 49d7d1aa535..09274334872 100644
--- src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py
+++ src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py
@@ -494,31 +494,30 @@
     src_parts = [f"{db['key']}|{db['label'].replace(',', '')}" for db in dbs]
     with open(out_path, "w") as f:
         f.write("# AUTO-GENERATED by ~/kent/src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py\n")
         f.write("# Do not edit by hand - re-run the merge script and re-commit.\n\n")
         f.write("    track lrSvAll\n")
         f.write("    parent lrSv\n")
         f.write("    bigDataUrl /gbdb/$D/lrSv/lrSvAll.bb\n")
         f.write("    shortLabel All LR SVs merged\n")
         f.write("    longLabel All long-read SVs merged across subtracks "
                 "by exact position, with per-database AC\n")
         f.write("    type bigBed 9 +\n")
         f.write("    itemRgb on\n")
         f.write("    visibility pack\n")
         f.write("    mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen "
                 "sources=$sources AF=$minAF-$maxAF AC=$AC\n")
-        f.write("    searchIndex name\n")
         # Source filter
         f.write("    filterValues.sources " + ",".join(src_parts) + "\n")
         f.write("    filterType.sources multipleListOr\n")
         f.write("    filterLabel.sources Source Database\n")
         # SV type
         f.write("    filterValues.svType DEL,INS,DUP,INV,CPX,MIXED,INSDEL,"
                 "CNV,BND,TRA,MEI\n")
         f.write("    filterType.svType multipleListOr\n")
         f.write("    filterLabel.svType SV Type\n")
         # Range filters
         f.write("    filter.svLen 0:30000000\n")
         f.write("    filterByRange.svLen on\n")
         f.write("    filterLabel.svLen SV Length (bp)\n")
         f.write("    filter.insLen 0:600000\n")
         f.write("    filterByRange.insLen on\n")