9711cb56111546aeed1be4b2c0ba1738080c848c
lrnassar
  Tue Jul 28 17:31:52 2026 -0700
Fix "basepair" wording and Methods punctuation on the Deleteriousness Predictions description pages per QA feedback. refs #37510

Changes "basepair" to "base" in the shared zoom-in instructions on clinPred,
revel, alphaMissense, caddSuper, and caddSuper1_7, and normalizes
predictionScoresSuper from "base pair" to "base" so the container is consistent.
Removes an awkward comma in the source-repository sentence on clinPred and revel.
Switches the hgdownload links on the clinPred page to https to match the other
links on that page.

diff --git src/hg/makeDb/trackDb/human/alphaMissense.html src/hg/makeDb/trackDb/human/alphaMissense.html
index 315cbaa8b4f..2808208f06c 100644
--- src/hg/makeDb/trackDb/human/alphaMissense.html
+++ src/hg/makeDb/trackDb/human/alphaMissense.html
@@ -10,31 +10,31 @@
 </p>
 
 
 <h2>Display Conventions and Configuration</h2>
 <p>There are four lettered subtracks, one for every nucleotide, showing
 scores for mutation from the reference to that
 nucleotide. All subtracks show the AlphaMissense score on mouseover. Across the exome, 
 there are three values per position, one for every possible
 nucleotide mutation. The fourth value, &quot;no mutation&quot;, representing
 the reference allele, e.g. A to A, is always set to zero, "0.0". AlphaMissense only
 takes into account amino acid changes, so a nucleotide change that results in no
 amino acid change (synonymous) is not scored. These are shown in the tracks
 with score "0.0". 
 
 <p>
-When using this track, zoom in until you can see every basepair at the
+When using this track, zoom in until you can see every base at the
 top of the display. Otherwise, there are several nucleotides per pixel under 
 your mouse cursor and no score will be shown on the mouseover tooltip.
 </p>
 
 <p><b>Track colors</b></p>
 <p>
 This track is colored according to the am_class column in the AlphaMissense_$db.tsv file.
 
 <table style="text-align: left;">
   <thead>
     <tr>
       <th>Range</th>
       <th>Classification</th>
     </tr>
   </thead>