9711cb56111546aeed1be4b2c0ba1738080c848c lrnassar Tue Jul 28 17:31:52 2026 -0700 Fix "basepair" wording and Methods punctuation on the Deleteriousness Predictions description pages per QA feedback. refs #37510 Changes "basepair" to "base" in the shared zoom-in instructions on clinPred, revel, alphaMissense, caddSuper, and caddSuper1_7, and normalizes predictionScoresSuper from "base pair" to "base" so the container is consistent. Removes an awkward comma in the source-repository sentence on clinPred and revel. Switches the hgdownload links on the clinPred page to https to match the other links on that page. diff --git src/hg/makeDb/trackDb/human/alphaMissense.html src/hg/makeDb/trackDb/human/alphaMissense.html index 315cbaa8b4f..2808208f06c 100644 --- src/hg/makeDb/trackDb/human/alphaMissense.html +++ src/hg/makeDb/trackDb/human/alphaMissense.html @@ -10,31 +10,31 @@ </p> <h2>Display Conventions and Configuration</h2> <p>There are four lettered subtracks, one for every nucleotide, showing scores for mutation from the reference to that nucleotide. All subtracks show the AlphaMissense score on mouseover. Across the exome, there are three values per position, one for every possible nucleotide mutation. The fourth value, "no mutation", representing the reference allele, e.g. A to A, is always set to zero, "0.0". AlphaMissense only takes into account amino acid changes, so a nucleotide change that results in no amino acid change (synonymous) is not scored. These are shown in the tracks with score "0.0". <p> -When using this track, zoom in until you can see every basepair at the +When using this track, zoom in until you can see every base at the top of the display. Otherwise, there are several nucleotides per pixel under your mouse cursor and no score will be shown on the mouseover tooltip. </p> <p><b>Track colors</b></p> <p> This track is colored according to the am_class column in the AlphaMissense_$db.tsv file. <table style="text-align: left;"> <thead> <tr> <th>Range</th> <th>Classification</th> </tr> </thead>