2e0addd016cfcbf61485b90d8980a8d75be622c2
lrnassar
  Sun Jun 14 00:10:06 2026 -0700
lrSv: sync description-page counts to the deduped data; drop Kim PD from the supertrack page. refs #36258

After the QA dedup, update the SV counts cited on the description pages to the
unique (post-dedup) totals for the tracks served, while leaving the upstream
release/paper counts in the Methods sections:
decodeSv     133,886 -> 119,453 displayed
gustafsonSv  113,696 -> 113,159 displayed
chirmade101  87,183  -> 87,068  displayed
aou1k        541,049 -> 540,155 displayed
hprc2v21Sv   596,063 -> 549,649 (hg38) and 608,435 -> 541,176 (hs1), throughout
(no upstream publication), incl. recomputed nested-snarl counts
lrSv.html: update the Available Datasets table count cells to match, set the
lrSvAll merged cell to 2,317,508 (post Kim PD removal), and remove the Kim PD
Brain row, blurb and reference from the supertrack page (the track is staged on
dev/alpha only, kept out of the merge and the description, and is not released).

diff --git src/hg/makeDb/trackDb/human/aou1kSv.html src/hg/makeDb/trackDb/human/aou1kSv.html
index 523c2be0439..cd3af17f400 100644
--- src/hg/makeDb/trackDb/human/aou1kSv.html
+++ src/hg/makeDb/trackDb/human/aou1kSv.html
@@ -1,22 +1,23 @@
 <h2>Description</h2>
 <p>
 This track shows structural variants (SVs) identified by PacBio HiFi long-read
 sequencing of 1,027 individuals from the All of Us (AoU) Research Program.
 Participants self-identified as Black or African American and were sequenced
-to ~8x coverage. The dataset contains 541,049 SVs (444,524 insertions and
-96,525 deletions) on autosomes.
+to ~8x coverage. The track contains 540,155 SVs (443,630 insertions and
+96,525 deletions) on autosomes, after removing byte-identical duplicate records
+from the 541,049-row release.
 </p>
 <p>
 SVs are annotated with population-specific allele frequencies across five
 ancestry groups (African, Admixed American, East Asian, European, South Asian),
 gene intersections from curated disease gene lists (OMIM, ACMG, cancer genes),
 regulatory element overlaps, and associations with eQTLs, GWAS loci, and
 clinical phenotypes from the AoU electronic health records.
 </p>
 
 <h2>Display Conventions and Configuration</h2>
 <p>
 Items are colored by SV type:
 <ul>
 <li><span style="color: rgb(200,0,0);">Deletions (DEL)</span> - red</li>
 <li><span style="color: rgb(0,0,200);">Insertions (INS)</span> - blue</li>