6ec6c29454ddc661b78710d1bb6de040cafaa66d
lrnassar
  Sat Jun 13 09:39:33 2026 -0700
lrSv: remove premature per-track release tags that broke tdbQuery -strict. refs #36258

The hprc2JasmineSv and lrSv1kLin stanzas carried "release alpha", but the file
is pulled in via "include lrSv.ra alpha", and tdbQuery -check -strict rejects a
stanza-level release tag when the include line already supplies a release
override ("Release tag in stanza with include release override"). The
include-level alpha already keeps the entire supertrack on dev/alpha, so these
two unpublished subtracks do not graduate regardless. Per-track release tags
for the do-not-release subtracks should be added when the include line is later
changed past alpha.

diff --git src/hg/makeDb/trackDb/human/lrSv.ra src/hg/makeDb/trackDb/human/lrSv.ra
index 1a2afbf596e..e66a29dacc5 100644
--- src/hg/makeDb/trackDb/human/lrSv.ra
+++ src/hg/makeDb/trackDb/human/lrSv.ra
@@ -277,31 +277,30 @@
     filterLabel.insLen Insertion Length
     filter.AC 0:463
     filterByRange.AC on
     filterLabel.AC Allele Count
     filter.alleleFreq 0:1
     filterByRange.alleleFreq on
     filterLimits.alleleFreq 0:1
     filterLabel.alleleFreq Allele Frequency
     filter.snarlLevel 0:7
     filterByRange.snarlLevel on
     filterLabel.snarlLevel Snarl Level
     skipEmptyFields on
 
     track hprc2JasmineSv
     parent lrSv
-    release alpha
     bigDataUrl /gbdb/$D/lrSv/hprc2Jasmine.bb
     shortLabel HPRC2 Jasmine 231 SVs
     longLabel Structural Variants from 231 HPRC v2 Assemblies (Jasmine merge of 14 SV callers)
     type bigBed 9 +
     itemRgb on
     visibility dense
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen samples=$nSamples/$alleleNumber AF=$alleleFreq callers=$nCallers ($callers)
     filterValues.svType DEL,INS
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:30176500
     filterByRange.svLen on
     filterLabel.svLen SV Length
     filter.insLen 0:30176500
     filterByRange.insLen on
@@ -499,31 +498,30 @@
     filter.svLen 0:1321484
     filterByRange.svLen on
     filterLabel.svLen SV Length
     filter.insLen 0:31711
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filter.geneCount 0:200
     filterByRange.geneCount on
     filterLabel.geneCount Gene Count
     skipEmptyFields on
 
     # NOT FOR RELEASE: data received from Eichler lab via email, not yet published.
     # Do not add to lrSvAll merged track until a preprint or paper is available.
     track lrSv1kLin
     parent lrSv
-    release alpha
     bigDataUrl /gbdb/$D/lrSv/lin1218.bb
     shortLabel 1KG Linear 1218 SVs
     longLabel Structural Variants from 1,218 Individuals (1000 Genomes, Linear Long-read)
     type bigBed 9 +
     itemRgb on
     visibility dense
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC=$AC/$AN AF=$AF AF_AFR=$afAfr AF_EUR=$afEur samples=$NS
     searchIndex name
     filterValues.svType DEL,INS
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:99565
     filterByRange.svLen on
     filterLabel.svLen SV Length (bp)
     filter.insLen 0:99968