ae2a62a18bf9750819f17f8f2237b1f7b1b9911f
lrnassar
  Sat Jun 13 10:48:41 2026 -0700
lrSv: comment out kwanhoSv and remove all searchIndex settings. refs #36258

Per ticket: hold the preliminary/unpublished Kim PD brain track (kwanhoSv) off
dev/alpha until publication (commented out; bigBed/.as/converter/makeDoc kept),
and remove the searchIndex name settings that were added by mistake. searchIndex
removed from colorsDbSv and lrSv1kLin in lrSv.ra, from lrSvAll.ra, and from the
lrSvMergeAll.py generator so future merges do not re-add it. The pending lrSvAll
rebuild will drop KimPD from databases.tsv / the merged track.

diff --git src/hg/makeDb/trackDb/human/lrSvAll.ra src/hg/makeDb/trackDb/human/lrSvAll.ra
index c3311db9d3d..7d76fecc763 100644
--- src/hg/makeDb/trackDb/human/lrSvAll.ra
+++ src/hg/makeDb/trackDb/human/lrSvAll.ra
@@ -1,28 +1,27 @@
 # AUTO-GENERATED by ~/kent/src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py
 # Do not edit by hand - re-run the merge script and re-commit.
 
     track lrSvAll
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/lrSvAll.bb
     shortLabel All LR SVs merged
     longLabel All long-read SVs merged across subtracks by exact position, with per-database AC
     type bigBed 9 +
     itemRgb on
     visibility pack
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen sources=$sources AF=$minAF-$maxAF AC=$AC
-    searchIndex name
     filterValues.sources CoLoRSdb|CoLoRSdb 1427 (PacBio),1000G-ONT-Vienna|1KG ONT Vienna 1019,1000G-ONT|1KG ONT 100 (Gustafson),AoU1K|All of Us 1027 (PacBio),Han945|Han Chinese 945,TommoJapan|ToMMo 333 (Japanese),GA4K|GA4K 502 (rare disease),deCODE|deCODE 3622 (Icelandic),HPRCv2.1|HPRC v2.1 233,HGSVC2|HGSVC2 32,HGSVC3|HGSVC3 65,KimPD|Kim PD Brain 100,ArabUAE53|Arab APR 53,China58|CPC 58 (Chinese),Svatalog101|SVatalog 101
     filterType.sources multipleListOr
     filterLabel.sources Source Database
     filterValues.svType DEL,INS,DUP,INV,CPX,MIXED,INSDEL,CNV,BND,TRA,MEI
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:30000000
     filterByRange.svLen on
     filterLabel.svLen SV Length (bp)
     filter.insLen 0:600000
     filterByRange.insLen on
     filterLabel.insLen Insertion Length (bp)
     filter.maxAF 0:1
     filterByRange.maxAF on
     filterLimits.maxAF 0:1