cba91350b2e4ad93790c0e76afb9b56660fb8c5a
lrnassar
  Thu Jun 19 18:25:15 2025 -0700
Updating the desc page with the new rules used in the track generation, primarily that we are not just using versions >.99. Refs #35758

diff --git src/hg/makeDb/trackDb/human/panelApp.html src/hg/makeDb/trackDb/human/panelApp.html
index 284a886997d..b20f29dd73d 100644
--- src/hg/makeDb/trackDb/human/panelApp.html
+++ src/hg/makeDb/trackDb/human/panelApp.html
@@ -16,58 +16,74 @@
 achieving consensus on gene panels in the <a target="_blank"
     href="https://www.england.nhs.uk/genomics/nhs-genomic-med-service/"> NHS
     Genomic Medicine Service (GMS)</a>. Later, the same platform was also deployed by
 <a target=_blank
    href="https://www.australiangenomics.org.au/tools-and-resources/panelapp-australia/">Australian
    Genomics</a>.
 </p>
 
 <p>
 <a href="https://panelapp.genomicsengland.co.uk/panels/entities/" target="_blank">Genes and genomic
 entities</a>, so short tandem repeats/STRs and copy number variants/CNVs,
 have been reviewed by experts to enable a community consensus to be reached on which
 genes and genomic entities should appear on a <b>diagnostics grade panel</b> for each disorder.
 A <b>rating system</b> (confidence level 0 - 3) is used to classify the level of evidence
 supporting association with phenotypes covered by the gene panel in question.
-Only PanelApp entries with a <b>version &gt; .99</b> are displayed in these tracks.
 </p>
+
 <p>
 There are six subtracks in total: Three different types (genes, STRs and CNVs) and these 
 three exist for both countries, England and Australia. The three types of tracks are:</p>
 
 <ul>
   <li>
     <b>PanelApp Genes (PanelApp Genes):</b>
     <br>
     shows genes with evidence supporting a gene-disease relationship.
 </li>
   <br>
   <li>
     <b>PanelApp STRs (PanelApp STRs):</b>
     <br>
     shows short tandem repeats that can be disease-causing when a particular number of repeats is
     present.</li>
   <br>
   <li>
     <b>Only on hg38: PanelApp Regions (PanelApp CNV Regions):</b>
     <br>
     shows copy-number variants (region-loss and region-gain) with evidence supporting a gene-disease
     relationship.</li>
 </ul>
 
 
 <h2>Display Conventions</h2>
+
+<p>
+There are a few differences between the Genomics England and the Australian Genomics tracks:<br><br>
+<b>Genomics England</b>
+<ul>
+<li>By default, only items with a version greater than or equal to 1 are displayed. This
+can be changed in the track configuration menu.</li>
+</ul>
+<b>Australian Genomics</b>
+<ul>
+<li>For the <b>PanelApp Genes</b> track, only items from the <b>Mendeliome</b> and <b>Incidentalome</b>
+panels are in the track.</li>
+<li>By default, all versions are displayed (versions greater than 0). This
+can be changed in the track configuration menu.</li>
+</ul></p>
+
 <p>
 The individual tracks are colored by <b>confidence level:</b>
 
 <ul>
 <li><b><font color="#32CD32">Score 3 (lime green)</font></b> - <b>High level of evidence</b> 
 for this gene-disease association. Demonstrates confidence that this gene should be 
 used for genome interpretation.</li>
 <li><b><font color="#FFBF00">Score 2 (amber)</font></b> - <b>Moderate evidence</b> 
 for this gene-disease association. This gene should not be used for genomic 
 interpretation.</li>
 <li><b><font color="red">Score 0 or 1 (red)</font></b> - <b>Not enough evidence</b> 
 for this gene-disease association. This gene should not be used for 
 genomic interpretation. </li>
 </ul>
 <p>