3f30aa9effe51ff75c1cfff288ae14cd00e118e0 lrnassar Tue Oct 21 09:34:02 2025 -0700 Staging evaSnp8 track, refs #36512 diff --git src/hg/makeDb/doc/evaSnp8.txt src/hg/makeDb/doc/evaSnp8.txt new file mode 100644 index 00000000000..ce6112a4755 --- /dev/null +++ src/hg/makeDb/doc/evaSnp8.txt @@ -0,0 +1,21 @@ +# Track for EVA snp release 8 - https://www.ebi.ac.uk/eva/?RS-Release&releaseVersion=8 +# Tracks built by Lou on 10/21/2025 + +# Track was built for the following 41 assemblies + +# The GCA accession on the eva release by accession list (https://ftp.ebi.ac.uk/pub/databases/eva/rs_releases/release_8/by_assembly/) +# were compared to all native assemblies we have. In total there are 945,193,664 variants + +# All assemblies were passed by the python pipeline described below +# Some assemblies had errors and were skipped, more info in RM #36512 + +# All files were created with the following python3 script: + +~/kent/src/hg/makeDb/scripts/evaSnp/evaSnp8.py + +#Then symlinks were made for all databases + +for dbs in $(cat /hive/data/outside/eva8/assemblyReleaseList.txt); +do +ln -s /hive/data/outside/eva8/$dbs/evaSnp8.bb /gbdb/$dbs/bbi/; +done