ae2a62a18bf9750819f17f8f2237b1f7b1b9911f
lrnassar
  Sat Jun 13 10:48:41 2026 -0700
lrSv: comment out kwanhoSv and remove all searchIndex settings. refs #36258

Per ticket: hold the preliminary/unpublished Kim PD brain track (kwanhoSv) off
dev/alpha until publication (commented out; bigBed/.as/converter/makeDoc kept),
and remove the searchIndex name settings that were added by mistake. searchIndex
removed from colorsDbSv and lrSv1kLin in lrSv.ra, from lrSvAll.ra, and from the
lrSvMergeAll.py generator so future merges do not re-add it. The pending lrSvAll
rebuild will drop KimPD from databases.tsv / the merged track.

diff --git src/hg/makeDb/trackDb/human/lrSv.ra src/hg/makeDb/trackDb/human/lrSv.ra
index 6d1d9eff546..60da0554002 100644
--- src/hg/makeDb/trackDb/human/lrSv.ra
+++ src/hg/makeDb/trackDb/human/lrSv.ra
@@ -1,560 +1,564 @@
 track lrSv
 superTrack on
 shortLabel Long-read SVs
 longLabel Structural Variants from Long-read Sequencing
 group varRep
 visibility hide
 # Supertrack-level filters. These are rendered on the supertrack's own
 # hgTrackUi page (superTrackUi in hgTrackUi.c). Cart values stored under
 # "lrSv.filter.<field>.min/max" are inherited at read time by every
 # subtrack via cartOptionalStringClosestToHome() walking tdb->parent. A
 # subtrack-level filter always wins over the supertrack-level one.
 filterValues.svType DEL|DEL (Deletion),INS|INS (Insertion),INV|INV (Inversion),CPX|CPX (Complex rearrangement),DUP|DUP (Duplication),CNV|CNV (Copy-number variant),CTX|CTX (Chromosomal translocation),INSDEL|INSDEL (Insertion-deletion),MIXED|MIXED (multi-allele snarl),BND|BND (Breakend / translocation),MEI|MEI (Mobile element insertion),TRA|TRA (Translocation)
 filterType.svType multipleListOr
 filterLabel.svType SV Type
 filter.svLen 0:250000000
 filterByRange.svLen on
 filterLabel.svLen SV Length (bp)
 filter.insLen 0:30176500
 filterByRange.insLen on
 filterLabel.insLen Insertion Length (bp)
 filter.AC 0:30000
 filterByRange.AC on
 filterLabel.AC Allele Count
 noScoreFilter on
 
     include lrSvAll.ra
 
     track colorsDbSv
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/colorsDb/sv.$D.bb
     shortLabel CoLoRSdb 1427 SVs
     longLabel Structural Variants from CoLoRSdb (Consortium of Long-Read Sequencing, 1,427 Samples)
     type bigBed 9 +
     itemRgb on
     visibility dense
     dataVersion v1.2.0
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AF=$AF AC=$AC/$AN (Hom:$acHom Het:$acHet Hemi:$acHemi) samples=$NS
-    searchIndex name
     filterValues.svType DEL,INS,INV,DUP
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:101381
     filterByRange.svLen on
     filterLabel.svLen SV Length (bp)
     filter.insLen 0:18724
     filterByRange.insLen on
     filterLabel.insLen Insertion Length (bp)
     filter.AC 0:2854
     filterByRange.AC on
     filterLabel.AC Alt Allele Count (AC)
     filter.AF 0:1
     filterByRange.AF on
     filterLimits.AF 0:1
     filterLabel.AF Allele Frequency (AF)
     skipEmptyFields on
     priority 1
 
     track lrSv1kgOnt
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/1kgOnt.bb
     shortLabel 1KG ONT 1019 SVs
     longLabel Structural Variants from 1,019 Diverse Humans (Vienna ONT, Schloissnig et al. 2025)
     type bigBed 9 +
     itemRgb on
     visibility dense
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen type=$insType family=$family AC=$AC AF=$alleleFreq
     filterValues.svType DEL,INS,CPX
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filterValues.insType COMPLEX_DUP,DUP,DUP_INTERSPERSED,INV_DUP,NUMT,PSD,VNTR,chimera,orphan,partnered,solo
     filterType.insType multipleListOr
     filterLabel.insType Insertion/Deletion Type
     filterValues.family Alu,HERVK,L1,LTR5_Hs,SVA
     filterType.family multipleListOr
     filterLabel.family Transposon Family
     filter.svLen 0:49171
     filterByRange.svLen on
     filterLabel.svLen SV Length
     filter.insLen 0:48091
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filterByRange.alleleFreq on
     filterLimits.alleleFreq 0:1
     filterLabel.alleleFreq Allele Frequency
     filter.AC 0:1816
     filterByRange.AC on
     filterLabel.AC Allele Count
     skipEmptyFields on
     dataVersion 1.1
     priority 2
 
     track gustafsonSv
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/gustafson.bb
     shortLabel 1KG ONT 100 SVs
     longLabel Structural Variants from 100 1000 Genomes ONT Samples (Gustafson et al. 2024)
     type bigBed 9 +
     itemRgb on
     visibility dense
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC=$AC samples=$sampleCount
     filterValues.svType DEL,INS,DUP,INV
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:98289
     filterByRange.svLen on
     filterLabel.svLen SV Length
     filter.insLen 0:25094
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filter.AC 0:200
     filterByRange.AC on
     filterLabel.AC Allele Count (placeholder)
     filter.sampleCount 1:100
     filterByRange.sampleCount on
     filterLabel.sampleCount Number of Carrier Samples
     skipEmptyFields on
     priority 3
 
     track aou1kSv
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/aou1k.bb
     shortLabel AoU 1027 SVs
     longLabel Structural Variants from 1,027 AoU Individuals (PacBio HiFi Long-read)
     type bigBed 9 +
     itemRgb on
     visibility dense
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC~$AC AF_AFR=$afAfr AF_EUR=$afEur
     filterValues.svType DEL,INS
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:9905
     filterByRange.svLen on
     filterLabel.svLen SV Length
     filter.insLen 0:9998
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filter.AC 0:2054
     filterByRange.AC on
     filterLabel.AC Allele Count (approx)
     filterByRange.afAfr on
     filterLimits.afAfr 0:1
     filterLabel.afAfr AF African
     filterByRange.afEur on
     filterLimits.afEur 0:1
     filterLabel.afEur AF European
     filterByRange.afEas on
     filterLimits.afEas 0:1
     filterLabel.afEas AF East Asian
     skipEmptyFields on
 
     track han945Sv
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/han945.bb
     shortLabel Han 945 SVs
     longLabel Structural Variants from 945 Han Chinese (Long-read Sequencing)
     type bigBed 9 +
     itemRgb on
     visibility dense
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AF=$alleleFreq AC=$AC samples=$sampleCount
     filterValues.svType DEL,INS,DUP,INV,TRA
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:99743
     filterByRange.svLen on
     filterLabel.svLen SV Length
     filter.insLen 0:27242
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filter.AC 0:1890
     filterByRange.AC on
     filterLabel.AC Allele Count (approx 2*SUPP)
     filter.sampleCount 1:945
     filterByRange.sampleCount on
     filterLabel.sampleCount Number of Supporting Samples
     filter.alleleFreq 0:1
     filterByRange.alleleFreq on
     filterLimits.alleleFreq 0:1
     filterLabel.alleleFreq Allele Frequency
     skipEmptyFields on
     urls chr2="hgTracks?position=$$"
 
     track tommoJpSv
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/tommoJp.bb
     shortLabel ToMMo 333 SVs
     longLabel Structural Variants from 333 Japanese Individuals (ToMMo, 111 Trios)
     type bigBed 9 +
     itemRgb on
     visibility dense
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AF=$alleleFreq AC=$AC
     filterValues.svType DEL,INS
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:99985
     filterByRange.svLen on
     filterLabel.svLen SV Length
     filter.insLen 0:30649
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filter.alleleFreq 0:1
     filterByRange.alleleFreq on
     filterLimits.alleleFreq 0:1
     filterLabel.alleleFreq Allele Frequency
     filter.AC 0:444
     filterByRange.AC on
     filterLabel.AC Allele Count
 
     track ga4kSv
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/ga4kSv.bb
     shortLabel GA4K 502 SVs
     longLabel Structural Variants from 502 Children's Mercy GA4K Probands (PacBio HiFi)
     type bigBed 9 +
     itemRgb on
     visibility dense
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC~$AC AF=$alleleFreq carriers=$carrierCount/$sampleTotal
     filterValues.svType DEL,INS,DUP,INV
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:809711
     filterByRange.svLen on
     filterLabel.svLen SV Length
     filter.insLen 0:14923
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filter.AC 0:996
     filterByRange.AC on
     filterLabel.AC Allele Count (approx)
     filter.alleleFreq 0:1
     filterByRange.alleleFreq on
     filterLimits.alleleFreq 0:1
     filterLabel.alleleFreq Allele Frequency
     filter.carrierCount 1:498
     filterByRange.carrierCount on
     filterLabel.carrierCount Number of Carrier Samples
 
     track decodeSv
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/decodeSv.bb
     shortLabel deCODE 3622 SVs
     longLabel High-confidence Structural Variants from 3,622 Icelanders (deCODE, Oxford Nanopore)
     type bigBed 9 +
     itemRgb on
     visibility dense
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC=$AC (placeholder)
     filterValues.svType DEL,INS,INSDEL
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:861080
     filterByRange.svLen on
     filterLabel.svLen SV Length
     filter.insLen 0:22130
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filter.AC 0:50
     filterByRange.AC on
     filterLabel.AC Allele Count (placeholder 50)
     skipEmptyFields on
 
     track hprc2v21Sv
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/hprc2v21.bb
     shortLabel HPRC v2.1 233 SVs
     longLabel Structural Variants from HPRC v2.1 Pangenome Graph (233 samples, minigraph-cactus)
     type bigBed 9 +
     itemRgb on
     visibility dense
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AF=$alleleFreq AC=$AC/$alleleNumber samples=$nSamples
     filterValues.svType INS,DEL
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:99835
     filterByRange.svLen on
     filterLabel.svLen SV Length
     filter.insLen 0:1064897
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filter.AC 0:463
     filterByRange.AC on
     filterLabel.AC Allele Count
     filter.alleleFreq 0:1
     filterByRange.alleleFreq on
     filterLimits.alleleFreq 0:1
     filterLabel.alleleFreq Allele Frequency
     filter.snarlLevel 0:7
     filterByRange.snarlLevel on
     filterLabel.snarlLevel Snarl Level
     skipEmptyFields on
 
     # hprc2JasmineSv commented out: the Jasmine-merged HPRC v2 multi-caller
     # set is a test/comparison callset (the Hall lab is not happy with it) and
     # is not for release. bigBed, .as, converter and makeDoc are retained.
     # refs #36258
     #track hprc2JasmineSv
     #parent lrSv
     #bigDataUrl /gbdb/$D/lrSv/hprc2Jasmine.bb
     #shortLabel HPRC2 Jasmine 231 SVs
     #longLabel Structural Variants from 231 HPRC v2 Assemblies (Jasmine merge of 14 SV callers)
     #type bigBed 9 +
     #itemRgb on
     #visibility dense
     #mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen samples=$nSamples/$alleleNumber AF=$alleleFreq callers=$nCallers ($callers)
     #filterValues.svType DEL,INS
     #filterType.svType multipleListOr
     #filterLabel.svType SV Type
     #filter.svLen 0:30176500
     #filterByRange.svLen on
     #filterLabel.svLen SV Length
     #filter.insLen 0:30176500
     #filterByRange.insLen on
     #filterLabel.insLen Insertion Length
     #filter.AC 0:231
     #filterByRange.AC on
     #filterLabel.AC Carrier Sample Count
     #filter.alleleFreq 0:1
     #filterByRange.alleleFreq on
     #filterLimits.alleleFreq 0:1
     #filterLabel.alleleFreq Carrier Frequency
     #filter.nCallers 1:14
     #filterByRange.nCallers on
     #filterLabel.nCallers Number of Supporting Callers
     #filterValues.callers DELLY,DeBreak,DeepVariant,PAV,SVDSS,SVIM,SVIM-asm,Sniffles2,cuteSV,cuteSV-asm,dipcall,longcallD,pbsv,sawfish
     #filterType.callers multipleListAnd
     #filterLabel.callers Supporting Callers
     #filterValues.sources PAV,dipcall,longcallD
     #filterType.sources multipleListAnd
     #filterLabel.sources Source Pipeline
     #skipEmptyFields on
 
     track hgsvc2Sv
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/hgsvc2.bb
     shortLabel HGSVC2 32 SVs
     longLabel Structural Variants from 32 Haplotype-Resolved Genomes (HGSVC2 freeze 4, Ebert 2021)
     type bigBed 9 +
     itemRgb on
     visibility dense
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen samples=$sampleCount AC=$AC AF=$popAllAf
     filterValues.svType DEL,INS,INV
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:57207414
     filterByRange.svLen on
     filterLabel.svLen SV Length
     filter.insLen 0:108546
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filter.AC 1:35
     filterByRange.AC on
     filterLabel.AC Allele Count (carrier haplotypes)
     filter.sampleCount 1:35
     filterByRange.sampleCount on
     filterLabel.sampleCount Sample Count
     filterValues.refTrf True,False
     filterType.refTrf multipleListOr
     filterLabel.refTrf In Tandem Repeat
     filter.refSd 0:1
     filterByRange.refSd on
     filterLimits.refSd 0:1
     filterLabel.refSd Segmental Duplication Overlap
     skipEmptyFields on
 
     track hgsvc3Sv
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/hgsvc3.bb
     shortLabel HGSVC3 65 SVs
     longLabel Structural Variants from 65 Diverse Samples (HGSVC3 ONT+HIFI)
     type bigBed 9 +
     itemRgb on
     visibility dense
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen samples=$sampleCount AC=$AC
     filterValues.svType DEL,INS,INV
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:30176500
     filterByRange.svLen on
     filterLabel.svLen SV Length
     filter.insLen 0:30176500
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filter.AC 1:136
     filterByRange.AC on
     filterLabel.AC Allele Count (carrier haplotypes)
     filter.sampleCount 1:65
     filterByRange.sampleCount on
     filterLabel.sampleCount Sample Count
     filterValues.refTrf True,False
     filterType.refTrf multipleListOr
     filterLabel.refTrf In Tandem Repeat
     filter.refSd 0:1
     filterByRange.refSd on
     filterLimits.refSd 0:1
     filterLabel.refSd Segmental Duplication Overlap
     skipEmptyFields on
 
-    track kwanhoSv
-    parent lrSv
-    bigDataUrl /gbdb/$D/lrSv/kwanho.bb
-    shortLabel Kim PD 100 prelim
-    longLabel Structural Variants from 100 Post-mortem Brains (Parkinson's disease, ILBD, Control; Kim et al. 2026, PacBio HiFi) - PRELIMINARY, data to be updated, contact the authors before using
-    type bigBed 9 +
-    itemRgb on
-    visibility dense
-    mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC=$AC AF_PD=$afPd AF_HC=$afHc diff=$differentialRate
-    filterValues.svType DEL,INS,DUP,INV
-    filterType.svType multipleListOr
-    filterLabel.svType SV Type
-    filter.svLen 0:200000000
-    filterByRange.svLen on
-    filterLabel.svLen SV Length
-    filter.insLen 0:20145
-    filterByRange.insLen on
-    filterLabel.insLen Insertion Length
-    filter.AC 0:200
-    filterByRange.AC on
-    filterLabel.AC Allele Count (PD+HC+ILBD)
-    filter.qual 0:100
-    filterByRange.qual on
-    filterLabel.qual Quality
-    filter.afPd 0:1
-    filterByRange.afPd on
-    filterLimits.afPd 0:1
-    filterLabel.afPd Allele Frequency (PD)
-    filter.afHc 0:1
-    filterByRange.afHc on
-    filterLimits.afHc 0:1
-    filterLabel.afHc Allele Frequency (HC)
-    filter.afIlbd 0:1
-    filterByRange.afIlbd on
-    filterLimits.afIlbd 0:1
-    filterLabel.afIlbd Allele Frequency (ILBD)
-    filter.differentialRate -1:1
-    filterByRange.differentialRate on
-    filterLimits.differentialRate -1:1
-    filterLabel.differentialRate Case-Control Differential (case - control)
-    skipEmptyFields on
+    # kwanhoSv commented out: the Kim PD brain callset is preliminary and
+    # unpublished (the description page says do not release until publication),
+    # and carries breakend artifacts up to ~190 Mb. Held off dev/alpha until a
+    # paper is out. bigBed, .as, converter and makeDoc are retained. The
+    # pending lrSvAll rebuild will also drop KimPD from databases.tsv so it
+    # leaves the merged track. refs #36258
+    #track kwanhoSv
+    #parent lrSv
+    #bigDataUrl /gbdb/$D/lrSv/kwanho.bb
+    #shortLabel Kim PD 100 prelim
+    #longLabel Structural Variants from 100 Post-mortem Brains (Parkinson's disease, ILBD, Control; Kim et al. 2026, PacBio HiFi) - PRELIMINARY, data to be updated, contact the authors before using
+    #type bigBed 9 +
+    #itemRgb on
+    #visibility dense
+    #mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC=$AC AF_PD=$afPd AF_HC=$afHc diff=$differentialRate
+    #filterValues.svType DEL,INS,DUP,INV
+    #filterType.svType multipleListOr
+    #filterLabel.svType SV Type
+    #filter.svLen 0:200000000
+    #filterByRange.svLen on
+    #filterLabel.svLen SV Length
+    #filter.insLen 0:20145
+    #filterByRange.insLen on
+    #filterLabel.insLen Insertion Length
+    #filter.AC 0:200
+    #filterByRange.AC on
+    #filterLabel.AC Allele Count (PD+HC+ILBD)
+    #filter.qual 0:100
+    #filterByRange.qual on
+    #filterLabel.qual Quality
+    #filter.afPd 0:1
+    #filterByRange.afPd on
+    #filterLimits.afPd 0:1
+    #filterLabel.afPd Allele Frequency (PD)
+    #filter.afHc 0:1
+    #filterByRange.afHc on
+    #filterLimits.afHc 0:1
+    #filterLabel.afHc Allele Frequency (HC)
+    #filter.afIlbd 0:1
+    #filterByRange.afIlbd on
+    #filterLimits.afIlbd 0:1
+    #filterLabel.afIlbd Allele Frequency (ILBD)
+    #filter.differentialRate -1:1
+    #filterByRange.differentialRate on
+    #filterLimits.differentialRate -1:1
+    #filterLabel.differentialRate Case-Control Differential (case - control)
+    #skipEmptyFields on
 
     track aprSv
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/apr.bb
     shortLabel Arab APR 53 SVs
     longLabel Structural Variants from the Arab Pangenome Reference (53 UAE-resident Arab samples)
     type bigBed 9 +
     itemRgb on
     visibility dense
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC=$AC/$alleleNumber AF=$alleleFreq samples=$numSamples alts=$numAlts
     filterValues.svType INS,DEL,CPX,MIXED
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:99885
     filterByRange.svLen on
     filterLabel.svLen SV Length
     filter.insLen 0:584016
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filter.AC 0:107
     filterByRange.AC on
     filterLabel.AC Allele Count
     filterByRange.alleleFreq on
     filterLimits.alleleFreq 0:1
     filterLabel.alleleFreq Allele Frequency
     skipEmptyFields on
 
     track cpc1Sv
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/cpc1.bb
     shortLabel CPC 58 SVs
     longLabel Structural Variants from the Chinese Pangenome Consortium (58 samples, CPC-only)
     type bigBed 9 +
     itemRgb on
     visibility dense
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC=$AC/$alleleNumber AF=$alleleFreq samples=$numSamples alts=$numAlts
     filterValues.svType INS,DEL,CPX,MIXED
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:8998096
     filterByRange.svLen on
     filterLabel.svLen SV Length
     filter.insLen 0:376583
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filter.AC 0:116
     filterByRange.AC on
     filterLabel.AC Allele Count
     filterByRange.alleleFreq on
     filterLimits.alleleFreq 0:1
     filterLabel.alleleFreq Allele Frequency
     skipEmptyFields on
 
     track chirmade101Sv
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/chirmade101.bb
     shortLabel SVatalog 101 SVs
     longLabel Structural Variants from 101 Long-read WGS (GWAS SVatalog, Chirmade 2026)
     type bigBed 9 +
     itemRgb on
     visibility dense
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen genes=$geneCount
     filterValues.svType DEL,INS,DUP,INV,CPX
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:1321484
     filterByRange.svLen on
     filterLabel.svLen SV Length
     filter.insLen 0:31711
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filter.geneCount 0:200
     filterByRange.geneCount on
     filterLabel.geneCount Gene Count
     skipEmptyFields on
 
     # NOT FOR RELEASE: data received from Eichler lab via email, not yet published.
     # Do not add to lrSvAll merged track until a preprint or paper is available.
     track lrSv1kLin
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/lin1218.bb
     shortLabel 1KG Linear 1218 SVs
     longLabel Structural Variants from 1,218 Individuals (1000 Genomes, Linear Long-read)
     type bigBed 9 +
     itemRgb on
     visibility dense
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC=$AC/$AN AF=$AF AF_AFR=$afAfr AF_EUR=$afEur samples=$NS
-    searchIndex name
     filterValues.svType DEL,INS
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:99565
     filterByRange.svLen on
     filterLabel.svLen SV Length (bp)
     filter.insLen 0:99968
     filterByRange.insLen on
     filterLabel.insLen Insertion Length (bp)
     filter.AC 0:2436
     filterByRange.AC on
     filterLabel.AC Allele Count
     filter.AF 0:1
     filterByRange.AF on
     filterLimits.AF 0:1
     filterLabel.AF Allele Frequency
     filterByRange.afAfr on
     filterLimits.afAfr 0:1
     filterLabel.afAfr AF African
     filterByRange.afAmr on
     filterLimits.afAmr 0:1
     filterLabel.afAmr AF Admixed American
     filterByRange.afEas on
     filterLimits.afEas 0:1
     filterLabel.afEas AF East Asian
     filterByRange.afEur on
     filterLimits.afEur 0:1
     filterLabel.afEur AF European
     filterByRange.afSas on
     filterLimits.afSas 0:1
     filterLabel.afSas AF South Asian
     filter.NS 1:1218
     filterByRange.NS on
     filterLabel.NS Samples with Genotype Data
     skipEmptyFields on