c6c684b4d0ec1926eb07485b899b0f48496f7063
lrnassar
  Sat Jun 13 05:30:17 2026 -0700
varFreqs: add a "New" pennantIcon to the supertrack as a placeholder
pointing to newsarch.html#TBD. Once the release news post lands, update the
anchor and tooltip with the actual date. refs #36642

diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra
index 7d2d7444cf1..bd0aef5a8e1 100644
--- src/hg/makeDb/trackDb/human/varFreqs.ra
+++ src/hg/makeDb/trackDb/human/varFreqs.ra
@@ -1,1097 +1,1098 @@
 track varFreqs
 shortLabel SNV Frequencies
 longLabel SNV Frequencies from various cohorts or national projects
 group varRep
 type bed 12
 visibility hide
 superTrack on
+pennantIcon New red ../goldenPath/newsarch.html#TBD "Released TBD"
 
         track varFreqsAffected
         shortLabel Disease cohorts
         longLabel SNV Frequencies: variants in ~130,000 affected or case individuals (autism, schizophrenia, rare disease cohorts)
         type bigBed 9 +
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_affected/varFreqsAffected.bb
         tableBrowser off
         visibility pack
         itemRgb on
         maxWindowToDraw 5000000
         priority 0.11
         mouseOver <b>Var:</b> ${name}<br><b>AA change:</b> ${aaChange}<br><b>Var type:</b> ${varType}<br><b>Conseq:</b> ${consequence}<br><b>Affected AF:</b> ${affectedAF}<br><b>Affected AC/AN:</b> ${affectedAC} / ${affectedAN}<br><b>Affected cohorts:</b> ${affectedCohorts}<br><b>Background AF:</b> ${backgroundAF}
         filterValues.affectedCohorts SPARK|SFARI SPARK WES,SFARI_WGS|SFARI SPARK WGS,GREGoR|GREGoR,SCHEMA|SCHEMA,GA4K|GA4K PacBio LR
         filterType.affectedCohorts multipleListOr
         filterLabel.affectedCohorts Affected/case cohort
         filterValues.backgroundSources AllOfUs|AllOfUs,SPARK|SFARI SPARK WES,SFARI_WGS|SFARI SPARK WGS,GenomeAsia|GenomeAsia SNVs,GenomeAsiaIndel|GenomeAsia Indels,NPM|NPM Singapore,KOVA|KOVA Korea,ToMMo|ToMMo Japan,FinnGen|FinnGen Finland,Saudi|Saudi,SweGen|SweGen Sweden,TOPMed|TOPMed,ABraOM|ABraOM Brazil,ALFA|ALFA,MGRB|MGRB Australia,HRC|HRC,SGDP|SGDP,HGDP1kG|gnomAD HGDP+1kG,GREGoR|GREGoR,SCHEMA|SCHEMA,CoLoRSdb|CoLoRSdb PacBio LR,SVatalog|SVatalog 101 10XG SR,Tishkoff180|Tishkoff 180 African WGS,WBBC|WBBC China,ChinaMAP|China ChinaMAP,GenomeIndia|GenomeIndia 9.7k WGS,GoNL|GoNL Netherlands ~13x SR
         filterType.backgroundSources multipleListOr
         filterLabel.backgroundSources Background source (population or unaffected)
         # Variant type and consequence filters
         filterValues.varType SNV|SNV,INS|Insertion,DEL|Deletion,MNV|MNV
         filterLabel.varType Variant Type
         filterValues.consequence missense|Missense,synonymous|Synonymous,stop_gained|Stop Gained,frameshift|Frameshift,splice_donor|Splice Donor,splice_acceptor|Splice Acceptor,intron|Intron,3_prime_utr|3' UTR,5_prime_utr|5' UTR,non_coding|Non-coding,.|Intergenic,others|Other
         filterType.consequence multipleListOr
         filterLabel.consequence Consequence
         # Length filters
         filterByRange.refLen on
         filterLabel.refLen Reference Length
         filter.refLen 1:28037
         filterLimits.refLen 1:28037
         filterByRange.altLen on
         filterLabel.altLen Alternate Length
         filter.altLen 1:6294
         filterLimits.altLen 1:6294
         filterByRange.varLen on
         filterLabel.varLen Length Change
         filter.varLen -28036:6293
         filterLimits.varLen -28036:6293
         # Affected/case frequency summary
         filterByRange.affectedAF on
         filterLabel.affectedAF Affected/case AF (pooled)
         filterLimits.affectedAF 0:1
         filterByRange.affectedAC on
         filterLabel.affectedAC Affected/case AC
         filterByRange.affectedAN on
         filterLabel.affectedAN Affected/case AN (pool denominator)
         # Background (population + unaffected) frequency summary
         filterByRange.backgroundAF on
         filterLabel.backgroundAF Background AF (pooled)
         filterLimits.backgroundAF 0:1
         filterByRange.backgroundAC on
         filterLabel.backgroundAC Background AC (population + unaffected)
         filterByRange.backgroundAN on
         filterLabel.backgroundAN Background AN (pool denominator)
         # Affected/case membership flag
         filterByRange.inAffected on
         filterLabel.inAffected Seen in an affected/case arm (1=yes, 0=no)
         filter.inAffected 0:1
         filterLimits.inAffected 0:1
         # Per-database AF filters
         filterByRange.AllOfUsAF on
         filterLabel.AllOfUsAF AllOfUs AF
         filterByRange.SPARKAF on
         filterLabel.SPARKAF SFARI SPARK WES AF
         filterByRange.SFARI_WGSAF on
         filterLabel.SFARI_WGSAF SFARI SPARK WGS AF
         filterByRange.GenomeAsiaAF on
         filterLabel.GenomeAsiaAF GenomeAsia SNVs AF
         filterByRange.GenomeAsiaIndelAF on
         filterLabel.GenomeAsiaIndelAF GenomeAsia Indels AF
         filterByRange.NPMAF on
         filterLabel.NPMAF NPM Singapore AF
         filterByRange.KOVAAF on
         filterLabel.KOVAAF KOVA Korea AF
         filterByRange.ToMMoAF on
         filterLabel.ToMMoAF ToMMo Japan AF
         filterByRange.FinnGenAF on
         filterLabel.FinnGenAF FinnGen Finland AF
         filterByRange.SaudiAF on
         filterLabel.SaudiAF Saudi AF
         filterByRange.SweGenAF on
         filterLabel.SweGenAF SweGen Sweden AF
         filterByRange.TOPMedAF on
         filterLabel.TOPMedAF TOPMed AF
         filterByRange.ABraOMAF on
         filterLabel.ABraOMAF ABraOM Brazil AF
         filterByRange.ALFAAF on
         filterLabel.ALFAAF ALFA AF
         filterByRange.MGRBAF on
         filterLabel.MGRBAF MGRB Australia AF
         filterByRange.HRCAF on
         filterLabel.HRCAF HRC AF
         filterByRange.SGDPAF on
         filterLabel.SGDPAF SGDP AF
         filterByRange.HGDP1kGAF on
         filterLabel.HGDP1kGAF gnomAD HGDP+1kG AF
         filterByRange.GREGoRAF on
         filterLabel.GREGoRAF GREGoR AF
         filterByRange.SCHEMAAF on
         filterLabel.SCHEMAAF SCHEMA AF
         filterByRange.GA4KAF on
         filterLabel.GA4KAF GA4K PacBio LR AF
         filterByRange.CoLoRSdbAF on
         filterLabel.CoLoRSdbAF CoLoRSdb PacBio LR AF
         filterByRange.SVatalogAF on
         filterLabel.SVatalogAF SVatalog 101 10XG SR AF
         filterByRange.Tishkoff180AF on
         filterLabel.Tishkoff180AF Tishkoff 180 African WGS AF
         filterByRange.WBBCAF on
         filterLabel.WBBCAF WBBC China AF
         filterByRange.ChinaMAPAF on
         filterLabel.ChinaMAPAF China ChinaMAP AF
         filterByRange.GenomeIndiaAF on
         filterLabel.GenomeIndiaAF GenomeIndia 9.7k WGS AF
         filterByRange.GoNLAF on
         filterLabel.GoNLAF GoNL Netherlands ~13x SR AF
         # Per-database AC filters
         filterByRange.AllOfUsAC on
         filterLabel.AllOfUsAC AllOfUs AC
         filterByRange.SPARKAC on
         filterLabel.SPARKAC SFARI SPARK WES AC
         filterByRange.SFARI_WGSAC on
         filterLabel.SFARI_WGSAC SFARI SPARK WGS AC
         filterByRange.GenomeAsiaAC on
         filterLabel.GenomeAsiaAC GenomeAsia SNVs AC
         filterByRange.GenomeAsiaIndelAC on
         filterLabel.GenomeAsiaIndelAC GenomeAsia Indels AC
         filterByRange.NPMAC on
         filterLabel.NPMAC NPM Singapore AC
         filterByRange.KOVAAC on
         filterLabel.KOVAAC KOVA Korea AC
         filterByRange.ToMMoAC on
         filterLabel.ToMMoAC ToMMo Japan AC
         filterByRange.FinnGenAC on
         filterLabel.FinnGenAC FinnGen Finland AC
         filterByRange.SaudiAC on
         filterLabel.SaudiAC Saudi AC
         filterByRange.SweGenAC on
         filterLabel.SweGenAC SweGen Sweden AC
         filterByRange.TOPMedAC on
         filterLabel.TOPMedAC TOPMed AC
         filterByRange.ABraOMAC on
         filterLabel.ABraOMAC ABraOM Brazil AC
         filterByRange.ALFAAC on
         filterLabel.ALFAAC ALFA AC
         filterByRange.MGRBAC on
         filterLabel.MGRBAC MGRB Australia AC
         filterByRange.HRCAC on
         filterLabel.HRCAC HRC AC
         filterByRange.SGDPAC on
         filterLabel.SGDPAC SGDP AC
         filterByRange.HGDP1kGAC on
         filterLabel.HGDP1kGAC gnomAD HGDP+1kG AC
         filterByRange.GREGoRAC on
         filterLabel.GREGoRAC GREGoR AC
         filterByRange.SCHEMAAC on
         filterLabel.SCHEMAAC SCHEMA AC
         filterByRange.GA4KAC on
         filterLabel.GA4KAC GA4K PacBio LR AC
         filterByRange.CoLoRSdbAC on
         filterLabel.CoLoRSdbAC CoLoRSdb PacBio LR AC
         filterByRange.SVatalogAC on
         filterLabel.SVatalogAC SVatalog 101 10XG SR AC
         filterByRange.Tishkoff180AC on
         filterLabel.Tishkoff180AC Tishkoff 180 African WGS AC
         filterByRange.WBBCAC on
         filterLabel.WBBCAC WBBC China AC
         filterByRange.ChinaMAPAC on
         filterLabel.ChinaMAPAC China ChinaMAP AC
         filterByRange.GenomeIndiaAC on
         filterLabel.GenomeIndiaAC GenomeIndia 9.7k WGS AC
         filterByRange.GoNLAC on
         filterLabel.GoNLAC GoNL Netherlands ~13x SR AC
         # Population-specific AF filters
         # AllOfUs populations
         filterByRange.AllOfUsAF_AFR on
         filterLabel.AllOfUsAF_AFR AllOfUs African AF
         filterByRange.AllOfUsAF_AMR on
         filterLabel.AllOfUsAF_AMR AllOfUs Indigenous American AF
         filterByRange.AllOfUsAF_EAS on
         filterLabel.AllOfUsAF_EAS AllOfUs East Asian AF
         filterByRange.AllOfUsAF_EUR on
         filterLabel.AllOfUsAF_EUR AllOfUs European AF
         filterByRange.AllOfUsAF_OCE on
         filterLabel.AllOfUsAF_OCE AllOfUs Oceanian AF
         filterByRange.AllOfUsAF_SAS on
         filterLabel.AllOfUsAF_SAS AllOfUs South Asian AF
         filterByRange.AllOfUsAC_AFR on
         filterLabel.AllOfUsAC_AFR AllOfUs African AC
         filterByRange.AllOfUsAC_AMR on
         filterLabel.AllOfUsAC_AMR AllOfUs Indigenous American AC
         filterByRange.AllOfUsAC_EAS on
         filterLabel.AllOfUsAC_EAS AllOfUs East Asian AC
         filterByRange.AllOfUsAC_EUR on
         filterLabel.AllOfUsAC_EUR AllOfUs European AC
         filterByRange.AllOfUsAC_OCE on
         filterLabel.AllOfUsAC_OCE AllOfUs Oceanian AC
         filterByRange.AllOfUsAC_SAS on
         filterLabel.AllOfUsAC_SAS AllOfUs South Asian AC
         # SFARI SPARK WES populations
         filterByRange.SPARKAF_AUT on
         filterLabel.SPARKAF_AUT SFARI SPARK WES ASD proband AF
         filterByRange.SPARKAF_NON_AUT on
         filterLabel.SPARKAF_NON_AUT SFARI SPARK WES Non-ASD family AF
         filterByRange.SPARKAC_AUT on
         filterLabel.SPARKAC_AUT SFARI SPARK WES ASD proband AC
         filterByRange.SPARKAC_NON_AUT on
         filterLabel.SPARKAC_NON_AUT SFARI SPARK WES Non-ASD family AC
         # SFARI SPARK WGS populations
         filterByRange.SFARI_WGSAF_AUT on
         filterLabel.SFARI_WGSAF_AUT SFARI SPARK WGS ASD proband AF
         filterByRange.SFARI_WGSAF_NON_AUT on
         filterLabel.SFARI_WGSAF_NON_AUT SFARI SPARK WGS Non-ASD family AF
         filterByRange.SFARI_WGSAC_AUT on
         filterLabel.SFARI_WGSAC_AUT SFARI SPARK WGS ASD proband AC
         filterByRange.SFARI_WGSAC_NON_AUT on
         filterLabel.SFARI_WGSAC_NON_AUT SFARI SPARK WGS Non-ASD family AC
         # GenomeAsia SNVs populations
         filterByRange.GenomeAsiaAF_NEA on
         filterLabel.GenomeAsiaAF_NEA GenomeAsia SNVs Northeast Asian AF
         filterByRange.GenomeAsiaAF_SEA on
         filterLabel.GenomeAsiaAF_SEA GenomeAsia SNVs Southeast Asian AF
         filterByRange.GenomeAsiaAF_SAS on
         filterLabel.GenomeAsiaAF_SAS GenomeAsia SNVs South Asian AF
         filterByRange.GenomeAsiaAF_OCE on
         filterLabel.GenomeAsiaAF_OCE GenomeAsia SNVs Oceanian AF
         filterByRange.GenomeAsiaAF_AMR on
         filterLabel.GenomeAsiaAF_AMR GenomeAsia SNVs American AF
         filterByRange.GenomeAsiaAF_AFR on
         filterLabel.GenomeAsiaAF_AFR GenomeAsia SNVs African AF
         filterByRange.GenomeAsiaAF_WER on
         filterLabel.GenomeAsiaAF_WER GenomeAsia SNVs Western European Ref AF
         filterByRange.GenomeAsiaAC_NEA on
         filterLabel.GenomeAsiaAC_NEA GenomeAsia SNVs Northeast Asian AC
         filterByRange.GenomeAsiaAC_SEA on
         filterLabel.GenomeAsiaAC_SEA GenomeAsia SNVs Southeast Asian AC
         filterByRange.GenomeAsiaAC_SAS on
         filterLabel.GenomeAsiaAC_SAS GenomeAsia SNVs South Asian AC
         filterByRange.GenomeAsiaAC_OCE on
         filterLabel.GenomeAsiaAC_OCE GenomeAsia SNVs Oceanian AC
         filterByRange.GenomeAsiaAC_AMR on
         filterLabel.GenomeAsiaAC_AMR GenomeAsia SNVs American AC
         filterByRange.GenomeAsiaAC_AFR on
         filterLabel.GenomeAsiaAC_AFR GenomeAsia SNVs African AC
         filterByRange.GenomeAsiaAC_WER on
         filterLabel.GenomeAsiaAC_WER GenomeAsia SNVs Western European Ref AC
         # NPM Singapore populations
         filterByRange.NPMAF_Chinese on
         filterLabel.NPMAF_Chinese NPM Singapore Singapore Chinese AF
         filterByRange.NPMAF_Malay on
         filterLabel.NPMAF_Malay NPM Singapore Singapore Malay AF
         filterByRange.NPMAF_Indian on
         filterLabel.NPMAF_Indian NPM Singapore Singapore Indian AF
         filterByRange.NPMAC_Chinese on
         filterLabel.NPMAC_Chinese NPM Singapore Singapore Chinese AC
         filterByRange.NPMAC_Malay on
         filterLabel.NPMAC_Malay NPM Singapore Singapore Malay AC
         filterByRange.NPMAC_Indian on
         filterLabel.NPMAC_Indian NPM Singapore Singapore Indian AC
         # gnomAD HGDP+1kG populations
         filterByRange.HGDP1kGAF_afr on
         filterLabel.HGDP1kGAF_afr gnomAD HGDP+1kG African AF
         filterByRange.HGDP1kGAF_ami on
         filterLabel.HGDP1kGAF_ami gnomAD HGDP+1kG Amish AF
         filterByRange.HGDP1kGAF_amr on
         filterLabel.HGDP1kGAF_amr gnomAD HGDP+1kG Latino AF
         filterByRange.HGDP1kGAF_asj on
         filterLabel.HGDP1kGAF_asj gnomAD HGDP+1kG Ashkenazi Jewish AF
         filterByRange.HGDP1kGAF_eas on
         filterLabel.HGDP1kGAF_eas gnomAD HGDP+1kG East Asian AF
         filterByRange.HGDP1kGAF_fin on
         filterLabel.HGDP1kGAF_fin gnomAD HGDP+1kG Finnish AF
         filterByRange.HGDP1kGAF_mid on
         filterLabel.HGDP1kGAF_mid gnomAD HGDP+1kG Middle Eastern AF
         filterByRange.HGDP1kGAF_nfe on
         filterLabel.HGDP1kGAF_nfe gnomAD HGDP+1kG Non-Finnish European AF
         filterByRange.HGDP1kGAF_oth on
         filterLabel.HGDP1kGAF_oth gnomAD HGDP+1kG Other AF
         filterByRange.HGDP1kGAF_sas on
         filterLabel.HGDP1kGAF_sas gnomAD HGDP+1kG South Asian AF
         filterByRange.HGDP1kGAC_afr on
         filterLabel.HGDP1kGAC_afr gnomAD HGDP+1kG African AC
         filterByRange.HGDP1kGAC_ami on
         filterLabel.HGDP1kGAC_ami gnomAD HGDP+1kG Amish AC
         filterByRange.HGDP1kGAC_amr on
         filterLabel.HGDP1kGAC_amr gnomAD HGDP+1kG Latino AC
         filterByRange.HGDP1kGAC_asj on
         filterLabel.HGDP1kGAC_asj gnomAD HGDP+1kG Ashkenazi Jewish AC
         filterByRange.HGDP1kGAC_eas on
         filterLabel.HGDP1kGAC_eas gnomAD HGDP+1kG East Asian AC
         filterByRange.HGDP1kGAC_fin on
         filterLabel.HGDP1kGAC_fin gnomAD HGDP+1kG Finnish AC
         filterByRange.HGDP1kGAC_mid on
         filterLabel.HGDP1kGAC_mid gnomAD HGDP+1kG Middle Eastern AC
         filterByRange.HGDP1kGAC_nfe on
         filterLabel.HGDP1kGAC_nfe gnomAD HGDP+1kG Non-Finnish European AC
         filterByRange.HGDP1kGAC_oth on
         filterLabel.HGDP1kGAC_oth gnomAD HGDP+1kG Other AC
         filterByRange.HGDP1kGAC_sas on
         filterLabel.HGDP1kGAC_sas gnomAD HGDP+1kG South Asian AC
         # GREGoR populations
         filterByRange.GREGoRAF_AFF on
         filterLabel.GREGoRAF_AFF GREGoR Affected AF
         filterByRange.GREGoRAF_UNA on
         filterLabel.GREGoRAF_UNA GREGoR Unaffected AF
         filterByRange.GREGoRAF_UNK on
         filterLabel.GREGoRAF_UNK GREGoR Unknown AF
         filterByRange.GREGoRAC_AFF on
         filterLabel.GREGoRAC_AFF GREGoR Affected AC
         filterByRange.GREGoRAC_UNA on
         filterLabel.GREGoRAC_UNA GREGoR Unaffected AC
         filterByRange.GREGoRAC_UNK on
         filterLabel.GREGoRAC_UNK GREGoR Unknown AC
         # SCHEMA populations
         filterByRange.SCHEMAAF_CASE on
         filterLabel.SCHEMAAF_CASE SCHEMA Schizophrenia case AF
         filterByRange.SCHEMAAF_CTRL on
         filterLabel.SCHEMAAF_CTRL SCHEMA Control AF
         filterByRange.SCHEMAAC_CASE on
         filterLabel.SCHEMAAC_CASE SCHEMA Schizophrenia case AC
         filterByRange.SCHEMAAC_CTRL on
         filterLabel.SCHEMAAC_CTRL SCHEMA Control AC
         # WBBC China populations
         filterByRange.WBBCAF_North on
         filterLabel.WBBCAF_North WBBC China North Han AF
         filterByRange.WBBCAF_Central on
         filterLabel.WBBCAF_Central WBBC China Central Han AF
         filterByRange.WBBCAF_South on
         filterLabel.WBBCAF_South WBBC China South Han AF
         filterByRange.WBBCAF_Lingnan on
         filterLabel.WBBCAF_Lingnan WBBC China Lingnan Han AF
         filterByRange.WBBCAC_North on
         filterLabel.WBBCAC_North WBBC China North Han AC
         filterByRange.WBBCAC_Central on
         filterLabel.WBBCAC_Central WBBC China Central Han AC
         filterByRange.WBBCAC_South on
         filterLabel.WBBCAC_South WBBC China South Han AC
         filterByRange.WBBCAC_Lingnan on
         filterLabel.WBBCAC_Lingnan WBBC China Lingnan Han AC
         skipEmptyFields on
 
         track varFreqsBackground
         shortLabel Population reference
         longLabel SNV Frequencies: variants in ~1.5 million individuals from population cohorts and unaffected or control arms
         type bigBed 9 +
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_background/varFreqsBackground.bb
         tableBrowser off
         visibility pack
         itemRgb on
         maxWindowToDraw 5000000
         priority 0.1
         mouseOver <b>Var:</b> ${name}<br><b>AA change:</b> ${aaChange}<br><b>Var type:</b> ${varType}<br><b>Conseq:</b> ${consequence}<br><b>Background AF:</b> ${backgroundAF}<br><b>Background AC/AN:</b> ${backgroundAC} / ${backgroundAN}<br><b>Sources:</b> ${backgroundSources}<br><b>Affected AF:</b> ${affectedAF}
         filterValues.affectedCohorts SPARK|SFARI SPARK WES,SFARI_WGS|SFARI SPARK WGS,GREGoR|GREGoR,SCHEMA|SCHEMA,GA4K|GA4K PacBio LR
         filterType.affectedCohorts multipleListOr
         filterLabel.affectedCohorts Affected/case cohort
         filterValues.backgroundSources AllOfUs|AllOfUs,SPARK|SFARI SPARK WES,SFARI_WGS|SFARI SPARK WGS,GenomeAsia|GenomeAsia SNVs,GenomeAsiaIndel|GenomeAsia Indels,NPM|NPM Singapore,KOVA|KOVA Korea,ToMMo|ToMMo Japan,FinnGen|FinnGen Finland,Saudi|Saudi,SweGen|SweGen Sweden,TOPMed|TOPMed,ABraOM|ABraOM Brazil,ALFA|ALFA,MGRB|MGRB Australia,HRC|HRC,SGDP|SGDP,HGDP1kG|gnomAD HGDP+1kG,GREGoR|GREGoR,SCHEMA|SCHEMA,CoLoRSdb|CoLoRSdb PacBio LR,SVatalog|SVatalog 101 10XG SR,Tishkoff180|Tishkoff 180 African WGS,WBBC|WBBC China,ChinaMAP|China ChinaMAP,GenomeIndia|GenomeIndia 9.7k WGS,GoNL|GoNL Netherlands ~13x SR
         filterType.backgroundSources multipleListOr
         filterLabel.backgroundSources Background source (population or unaffected)
         # Variant type and consequence filters
         filterValues.varType SNV|SNV,INS|Insertion,DEL|Deletion,MNV|MNV
         filterLabel.varType Variant Type
         filterValues.consequence missense|Missense,synonymous|Synonymous,stop_gained|Stop Gained,frameshift|Frameshift,splice_donor|Splice Donor,splice_acceptor|Splice Acceptor,intron|Intron,3_prime_utr|3' UTR,5_prime_utr|5' UTR,non_coding|Non-coding,.|Intergenic,others|Other
         filterType.consequence multipleListOr
         filterLabel.consequence Consequence
         # Length filters
         filterByRange.refLen on
         filterLabel.refLen Reference Length
         filter.refLen 1:28037
         filterLimits.refLen 1:28037
         filterByRange.altLen on
         filterLabel.altLen Alternate Length
         filter.altLen 1:6294
         filterLimits.altLen 1:6294
         filterByRange.varLen on
         filterLabel.varLen Length Change
         filter.varLen -28036:6293
         filterLimits.varLen -28036:6293
         # Affected/case frequency summary
         filterByRange.affectedAF on
         filterLabel.affectedAF Affected/case AF (pooled)
         filterLimits.affectedAF 0:1
         filterByRange.affectedAC on
         filterLabel.affectedAC Affected/case AC
         filterByRange.affectedAN on
         filterLabel.affectedAN Affected/case AN (pool denominator)
         # Background (population + unaffected) frequency summary
         filterByRange.backgroundAF on
         filterLabel.backgroundAF Background AF (pooled)
         filterLimits.backgroundAF 0:1
         filterByRange.backgroundAC on
         filterLabel.backgroundAC Background AC (population + unaffected)
         filterByRange.backgroundAN on
         filterLabel.backgroundAN Background AN (pool denominator)
         # Affected/case membership flag
         filterByRange.inAffected on
         filterLabel.inAffected Seen in an affected/case arm (1=yes, 0=no)
         filter.inAffected 0:1
         filterLimits.inAffected 0:1
         # Per-database AF filters
         filterByRange.AllOfUsAF on
         filterLabel.AllOfUsAF AllOfUs AF
         filterByRange.SPARKAF on
         filterLabel.SPARKAF SFARI SPARK WES AF
         filterByRange.SFARI_WGSAF on
         filterLabel.SFARI_WGSAF SFARI SPARK WGS AF
         filterByRange.GenomeAsiaAF on
         filterLabel.GenomeAsiaAF GenomeAsia SNVs AF
         filterByRange.GenomeAsiaIndelAF on
         filterLabel.GenomeAsiaIndelAF GenomeAsia Indels AF
         filterByRange.NPMAF on
         filterLabel.NPMAF NPM Singapore AF
         filterByRange.KOVAAF on
         filterLabel.KOVAAF KOVA Korea AF
         filterByRange.ToMMoAF on
         filterLabel.ToMMoAF ToMMo Japan AF
         filterByRange.FinnGenAF on
         filterLabel.FinnGenAF FinnGen Finland AF
         filterByRange.SaudiAF on
         filterLabel.SaudiAF Saudi AF
         filterByRange.SweGenAF on
         filterLabel.SweGenAF SweGen Sweden AF
         filterByRange.TOPMedAF on
         filterLabel.TOPMedAF TOPMed AF
         filterByRange.ABraOMAF on
         filterLabel.ABraOMAF ABraOM Brazil AF
         filterByRange.ALFAAF on
         filterLabel.ALFAAF ALFA AF
         filterByRange.MGRBAF on
         filterLabel.MGRBAF MGRB Australia AF
         filterByRange.HRCAF on
         filterLabel.HRCAF HRC AF
         filterByRange.SGDPAF on
         filterLabel.SGDPAF SGDP AF
         filterByRange.HGDP1kGAF on
         filterLabel.HGDP1kGAF gnomAD HGDP+1kG AF
         filterByRange.GREGoRAF on
         filterLabel.GREGoRAF GREGoR AF
         filterByRange.SCHEMAAF on
         filterLabel.SCHEMAAF SCHEMA AF
         filterByRange.GA4KAF on
         filterLabel.GA4KAF GA4K PacBio LR AF
         filterByRange.CoLoRSdbAF on
         filterLabel.CoLoRSdbAF CoLoRSdb PacBio LR AF
         filterByRange.SVatalogAF on
         filterLabel.SVatalogAF SVatalog 101 10XG SR AF
         filterByRange.Tishkoff180AF on
         filterLabel.Tishkoff180AF Tishkoff 180 African WGS AF
         filterByRange.WBBCAF on
         filterLabel.WBBCAF WBBC China AF
         filterByRange.ChinaMAPAF on
         filterLabel.ChinaMAPAF China ChinaMAP AF
         filterByRange.GenomeIndiaAF on
         filterLabel.GenomeIndiaAF GenomeIndia 9.7k WGS AF
         filterByRange.GoNLAF on
         filterLabel.GoNLAF GoNL Netherlands ~13x SR AF
         # Per-database AC filters
         filterByRange.AllOfUsAC on
         filterLabel.AllOfUsAC AllOfUs AC
         filterByRange.SPARKAC on
         filterLabel.SPARKAC SFARI SPARK WES AC
         filterByRange.SFARI_WGSAC on
         filterLabel.SFARI_WGSAC SFARI SPARK WGS AC
         filterByRange.GenomeAsiaAC on
         filterLabel.GenomeAsiaAC GenomeAsia SNVs AC
         filterByRange.GenomeAsiaIndelAC on
         filterLabel.GenomeAsiaIndelAC GenomeAsia Indels AC
         filterByRange.NPMAC on
         filterLabel.NPMAC NPM Singapore AC
         filterByRange.KOVAAC on
         filterLabel.KOVAAC KOVA Korea AC
         filterByRange.ToMMoAC on
         filterLabel.ToMMoAC ToMMo Japan AC
         filterByRange.FinnGenAC on
         filterLabel.FinnGenAC FinnGen Finland AC
         filterByRange.SaudiAC on
         filterLabel.SaudiAC Saudi AC
         filterByRange.SweGenAC on
         filterLabel.SweGenAC SweGen Sweden AC
         filterByRange.TOPMedAC on
         filterLabel.TOPMedAC TOPMed AC
         filterByRange.ABraOMAC on
         filterLabel.ABraOMAC ABraOM Brazil AC
         filterByRange.ALFAAC on
         filterLabel.ALFAAC ALFA AC
         filterByRange.MGRBAC on
         filterLabel.MGRBAC MGRB Australia AC
         filterByRange.HRCAC on
         filterLabel.HRCAC HRC AC
         filterByRange.SGDPAC on
         filterLabel.SGDPAC SGDP AC
         filterByRange.HGDP1kGAC on
         filterLabel.HGDP1kGAC gnomAD HGDP+1kG AC
         filterByRange.GREGoRAC on
         filterLabel.GREGoRAC GREGoR AC
         filterByRange.SCHEMAAC on
         filterLabel.SCHEMAAC SCHEMA AC
         filterByRange.GA4KAC on
         filterLabel.GA4KAC GA4K PacBio LR AC
         filterByRange.CoLoRSdbAC on
         filterLabel.CoLoRSdbAC CoLoRSdb PacBio LR AC
         filterByRange.SVatalogAC on
         filterLabel.SVatalogAC SVatalog 101 10XG SR AC
         filterByRange.Tishkoff180AC on
         filterLabel.Tishkoff180AC Tishkoff 180 African WGS AC
         filterByRange.WBBCAC on
         filterLabel.WBBCAC WBBC China AC
         filterByRange.ChinaMAPAC on
         filterLabel.ChinaMAPAC China ChinaMAP AC
         filterByRange.GenomeIndiaAC on
         filterLabel.GenomeIndiaAC GenomeIndia 9.7k WGS AC
         filterByRange.GoNLAC on
         filterLabel.GoNLAC GoNL Netherlands ~13x SR AC
         # Population-specific AF filters
         # AllOfUs populations
         filterByRange.AllOfUsAF_AFR on
         filterLabel.AllOfUsAF_AFR AllOfUs African AF
         filterByRange.AllOfUsAF_AMR on
         filterLabel.AllOfUsAF_AMR AllOfUs Indigenous American AF
         filterByRange.AllOfUsAF_EAS on
         filterLabel.AllOfUsAF_EAS AllOfUs East Asian AF
         filterByRange.AllOfUsAF_EUR on
         filterLabel.AllOfUsAF_EUR AllOfUs European AF
         filterByRange.AllOfUsAF_OCE on
         filterLabel.AllOfUsAF_OCE AllOfUs Oceanian AF
         filterByRange.AllOfUsAF_SAS on
         filterLabel.AllOfUsAF_SAS AllOfUs South Asian AF
         filterByRange.AllOfUsAC_AFR on
         filterLabel.AllOfUsAC_AFR AllOfUs African AC
         filterByRange.AllOfUsAC_AMR on
         filterLabel.AllOfUsAC_AMR AllOfUs Indigenous American AC
         filterByRange.AllOfUsAC_EAS on
         filterLabel.AllOfUsAC_EAS AllOfUs East Asian AC
         filterByRange.AllOfUsAC_EUR on
         filterLabel.AllOfUsAC_EUR AllOfUs European AC
         filterByRange.AllOfUsAC_OCE on
         filterLabel.AllOfUsAC_OCE AllOfUs Oceanian AC
         filterByRange.AllOfUsAC_SAS on
         filterLabel.AllOfUsAC_SAS AllOfUs South Asian AC
         # SFARI SPARK WES populations
         filterByRange.SPARKAF_AUT on
         filterLabel.SPARKAF_AUT SFARI SPARK WES ASD proband AF
         filterByRange.SPARKAF_NON_AUT on
         filterLabel.SPARKAF_NON_AUT SFARI SPARK WES Non-ASD family AF
         filterByRange.SPARKAC_AUT on
         filterLabel.SPARKAC_AUT SFARI SPARK WES ASD proband AC
         filterByRange.SPARKAC_NON_AUT on
         filterLabel.SPARKAC_NON_AUT SFARI SPARK WES Non-ASD family AC
         # SFARI SPARK WGS populations
         filterByRange.SFARI_WGSAF_AUT on
         filterLabel.SFARI_WGSAF_AUT SFARI SPARK WGS ASD proband AF
         filterByRange.SFARI_WGSAF_NON_AUT on
         filterLabel.SFARI_WGSAF_NON_AUT SFARI SPARK WGS Non-ASD family AF
         filterByRange.SFARI_WGSAC_AUT on
         filterLabel.SFARI_WGSAC_AUT SFARI SPARK WGS ASD proband AC
         filterByRange.SFARI_WGSAC_NON_AUT on
         filterLabel.SFARI_WGSAC_NON_AUT SFARI SPARK WGS Non-ASD family AC
         # GenomeAsia SNVs populations
         filterByRange.GenomeAsiaAF_NEA on
         filterLabel.GenomeAsiaAF_NEA GenomeAsia SNVs Northeast Asian AF
         filterByRange.GenomeAsiaAF_SEA on
         filterLabel.GenomeAsiaAF_SEA GenomeAsia SNVs Southeast Asian AF
         filterByRange.GenomeAsiaAF_SAS on
         filterLabel.GenomeAsiaAF_SAS GenomeAsia SNVs South Asian AF
         filterByRange.GenomeAsiaAF_OCE on
         filterLabel.GenomeAsiaAF_OCE GenomeAsia SNVs Oceanian AF
         filterByRange.GenomeAsiaAF_AMR on
         filterLabel.GenomeAsiaAF_AMR GenomeAsia SNVs American AF
         filterByRange.GenomeAsiaAF_AFR on
         filterLabel.GenomeAsiaAF_AFR GenomeAsia SNVs African AF
         filterByRange.GenomeAsiaAF_WER on
         filterLabel.GenomeAsiaAF_WER GenomeAsia SNVs Western European Ref AF
         filterByRange.GenomeAsiaAC_NEA on
         filterLabel.GenomeAsiaAC_NEA GenomeAsia SNVs Northeast Asian AC
         filterByRange.GenomeAsiaAC_SEA on
         filterLabel.GenomeAsiaAC_SEA GenomeAsia SNVs Southeast Asian AC
         filterByRange.GenomeAsiaAC_SAS on
         filterLabel.GenomeAsiaAC_SAS GenomeAsia SNVs South Asian AC
         filterByRange.GenomeAsiaAC_OCE on
         filterLabel.GenomeAsiaAC_OCE GenomeAsia SNVs Oceanian AC
         filterByRange.GenomeAsiaAC_AMR on
         filterLabel.GenomeAsiaAC_AMR GenomeAsia SNVs American AC
         filterByRange.GenomeAsiaAC_AFR on
         filterLabel.GenomeAsiaAC_AFR GenomeAsia SNVs African AC
         filterByRange.GenomeAsiaAC_WER on
         filterLabel.GenomeAsiaAC_WER GenomeAsia SNVs Western European Ref AC
         # NPM Singapore populations
         filterByRange.NPMAF_Chinese on
         filterLabel.NPMAF_Chinese NPM Singapore Singapore Chinese AF
         filterByRange.NPMAF_Malay on
         filterLabel.NPMAF_Malay NPM Singapore Singapore Malay AF
         filterByRange.NPMAF_Indian on
         filterLabel.NPMAF_Indian NPM Singapore Singapore Indian AF
         filterByRange.NPMAC_Chinese on
         filterLabel.NPMAC_Chinese NPM Singapore Singapore Chinese AC
         filterByRange.NPMAC_Malay on
         filterLabel.NPMAC_Malay NPM Singapore Singapore Malay AC
         filterByRange.NPMAC_Indian on
         filterLabel.NPMAC_Indian NPM Singapore Singapore Indian AC
         # gnomAD HGDP+1kG populations
         filterByRange.HGDP1kGAF_afr on
         filterLabel.HGDP1kGAF_afr gnomAD HGDP+1kG African AF
         filterByRange.HGDP1kGAF_ami on
         filterLabel.HGDP1kGAF_ami gnomAD HGDP+1kG Amish AF
         filterByRange.HGDP1kGAF_amr on
         filterLabel.HGDP1kGAF_amr gnomAD HGDP+1kG Latino AF
         filterByRange.HGDP1kGAF_asj on
         filterLabel.HGDP1kGAF_asj gnomAD HGDP+1kG Ashkenazi Jewish AF
         filterByRange.HGDP1kGAF_eas on
         filterLabel.HGDP1kGAF_eas gnomAD HGDP+1kG East Asian AF
         filterByRange.HGDP1kGAF_fin on
         filterLabel.HGDP1kGAF_fin gnomAD HGDP+1kG Finnish AF
         filterByRange.HGDP1kGAF_mid on
         filterLabel.HGDP1kGAF_mid gnomAD HGDP+1kG Middle Eastern AF
         filterByRange.HGDP1kGAF_nfe on
         filterLabel.HGDP1kGAF_nfe gnomAD HGDP+1kG Non-Finnish European AF
         filterByRange.HGDP1kGAF_oth on
         filterLabel.HGDP1kGAF_oth gnomAD HGDP+1kG Other AF
         filterByRange.HGDP1kGAF_sas on
         filterLabel.HGDP1kGAF_sas gnomAD HGDP+1kG South Asian AF
         filterByRange.HGDP1kGAC_afr on
         filterLabel.HGDP1kGAC_afr gnomAD HGDP+1kG African AC
         filterByRange.HGDP1kGAC_ami on
         filterLabel.HGDP1kGAC_ami gnomAD HGDP+1kG Amish AC
         filterByRange.HGDP1kGAC_amr on
         filterLabel.HGDP1kGAC_amr gnomAD HGDP+1kG Latino AC
         filterByRange.HGDP1kGAC_asj on
         filterLabel.HGDP1kGAC_asj gnomAD HGDP+1kG Ashkenazi Jewish AC
         filterByRange.HGDP1kGAC_eas on
         filterLabel.HGDP1kGAC_eas gnomAD HGDP+1kG East Asian AC
         filterByRange.HGDP1kGAC_fin on
         filterLabel.HGDP1kGAC_fin gnomAD HGDP+1kG Finnish AC
         filterByRange.HGDP1kGAC_mid on
         filterLabel.HGDP1kGAC_mid gnomAD HGDP+1kG Middle Eastern AC
         filterByRange.HGDP1kGAC_nfe on
         filterLabel.HGDP1kGAC_nfe gnomAD HGDP+1kG Non-Finnish European AC
         filterByRange.HGDP1kGAC_oth on
         filterLabel.HGDP1kGAC_oth gnomAD HGDP+1kG Other AC
         filterByRange.HGDP1kGAC_sas on
         filterLabel.HGDP1kGAC_sas gnomAD HGDP+1kG South Asian AC
         # GREGoR populations
         filterByRange.GREGoRAF_AFF on
         filterLabel.GREGoRAF_AFF GREGoR Affected AF
         filterByRange.GREGoRAF_UNA on
         filterLabel.GREGoRAF_UNA GREGoR Unaffected AF
         filterByRange.GREGoRAF_UNK on
         filterLabel.GREGoRAF_UNK GREGoR Unknown AF
         filterByRange.GREGoRAC_AFF on
         filterLabel.GREGoRAC_AFF GREGoR Affected AC
         filterByRange.GREGoRAC_UNA on
         filterLabel.GREGoRAC_UNA GREGoR Unaffected AC
         filterByRange.GREGoRAC_UNK on
         filterLabel.GREGoRAC_UNK GREGoR Unknown AC
         # SCHEMA populations
         filterByRange.SCHEMAAF_CASE on
         filterLabel.SCHEMAAF_CASE SCHEMA Schizophrenia case AF
         filterByRange.SCHEMAAF_CTRL on
         filterLabel.SCHEMAAF_CTRL SCHEMA Control AF
         filterByRange.SCHEMAAC_CASE on
         filterLabel.SCHEMAAC_CASE SCHEMA Schizophrenia case AC
         filterByRange.SCHEMAAC_CTRL on
         filterLabel.SCHEMAAC_CTRL SCHEMA Control AC
         # WBBC China populations
         filterByRange.WBBCAF_North on
         filterLabel.WBBCAF_North WBBC China North Han AF
         filterByRange.WBBCAF_Central on
         filterLabel.WBBCAF_Central WBBC China Central Han AF
         filterByRange.WBBCAF_South on
         filterLabel.WBBCAF_South WBBC China South Han AF
         filterByRange.WBBCAF_Lingnan on
         filterLabel.WBBCAF_Lingnan WBBC China Lingnan Han AF
         filterByRange.WBBCAC_North on
         filterLabel.WBBCAC_North WBBC China North Han AC
         filterByRange.WBBCAC_Central on
         filterLabel.WBBCAC_Central WBBC China Central Han AC
         filterByRange.WBBCAC_South on
         filterLabel.WBBCAC_South WBBC China South Han AC
         filterByRange.WBBCAC_Lingnan on
         filterLabel.WBBCAC_Lingnan WBBC China Lingnan Han AC
         skipEmptyFields on
 
         track varFreqsArray
         shortLabel Genotyping Array Databases Combined
         longLabel SNV Frequencies: Genotyping-array cohorts combined (TPMI, Mexico Biobank, UK Biobank imputed)
         type bigBed 9 +
         parent varFreqs off
         bigDataUrl /gbdb/$D/varFreqs/_array/varFreqsArray.bb
         tableBrowser off
         visibility hide
         itemRgb on
         maxWindowToDraw 5000000
         priority 0.2
         mouseOver <b>Var:</b> $name<br><b>AA change:</b> $aaChange<br><b>Var type:</b> $varType<br><b>Conseq:</b> $consequence<br><b>Max AF:</b> $maxAF<br><b>Total AC:</b> $totalAC<br><b>Sources:</b> $sources
         filterValues.sources TPMI|TPMI Taiwan,MexBB|Mexico Biobank,UKBB|UK Biobank imputed
         filterType.sources multipleListOr
         filterLabel.sources Source Database
         filterValues.varType SNV|SNV,INS|Insertion,DEL|Deletion,MNV|MNV
         filterLabel.varType Variant Type
         filterValues.consequence missense|Missense,synonymous|Synonymous,stop_gained|Stop Gained,frameshift|Frameshift,splice_donor|Splice Donor,splice_acceptor|Splice Acceptor,intron|Intron,3_prime_utr|3' UTR,5_prime_utr|5' UTR,non_coding|Non-coding,.|Intergenic,others|Other
         filterType.consequence multipleListOr
         filterLabel.consequence Consequence
         filterByRange.refLen on
         filterLabel.refLen Reference Length
         filterByRange.altLen on
         filterLabel.altLen Alternate Length
         filterByRange.varLen on
         filterLabel.varLen Length Change
         filterByRange.maxAF on
         filterLabel.maxAF Max Allele Frequency
         filterLimits.maxAF 0:1
         filterByRange.totalAC on
         filterLabel.totalAC Total Allele Count (all databases)
         filterByRange.TPMIAF on
         filterLabel.TPMIAF TPMI Taiwan AF
         filterByRange.MexBBAF on
         filterLabel.MexBBAF Mexico Biobank AF
         filterByRange.UKBBAF on
         filterLabel.UKBBAF UK Biobank imputed AF
         filterByRange.TPMIAC on
         filterLabel.TPMIAC TPMI Taiwan AC
         filterByRange.MexBBAC on
         filterLabel.MexBBAC Mexico Biobank AC
         filterByRange.UKBBAC on
         filterLabel.UKBBAC UK Biobank imputed AC
         skipEmptyFields on
 
         track allofus
         shortLabel AllOfUs v7 245k WGS
         longLabel SNV Frequencies: AllOfUs v7 - 245k WGS, local-ancestry-stratified, AC>=20
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_allofus/allOfUs.locAncFreq.vcf.gz
         dataVersion V7
         visibility hide
         tableBrowser off
         priority 2
 
         #track me
         #shortLabel Regeneron Million Exomes 983k WES
         #longLabel SNV Frequencies: Regeneron One Million Exomes (ME) Project - 983k WGS
         #parent varFreqs on
         #bigDataUrl /gbdb/$D/varFreqs/me/me.freq.vcf.gz
         #visibility pack
         #type vcfTabix
         #hapClusterEnabled true
         #dataVersion 10/04/2023, v1.1.3
         #tableBrowser off
         #priority 1
 
         track topmed
         shortLabel NHLBI TOPMed 10 151k WGS
         longLabel SNV Frequencies: NHLBI TOPMed - 151k WGS
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_topmed/topmed10.vcf.gz
         dataVersion Freeze 10
         tableBrowser off
         visibility hide
         priority 22
 
         track sfariSparkExomes
         shortLabel SFARI SPARK 140k WES
         longLabel SNV Frequencies: SFARI SPARK - 140k WES
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_sfari/SPARK.iWES_v3.2024_08.deepvariant.norm.vcf.gz
         dataVersion iWES v3 2024_08
         tableBrowser off
         visibility hide
         priority 26
 
         track sfariSparkWgs
         shortLabel SFARI SPARK 12k WGS
         longLabel SNV Frequencies: SFARI SPARK - 12,519 WGS
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_sfari/wgs_12519_genome.deepvariant.norm.vcf.gz
         dataVersion iWGS v1.1
         visibility hide
         priority 25
         html sfariSparkExomes
         tableBrowser off
 
         #track mcps
         #shortLabel Mexico City Prospective Study 10k WGS+141k WES
         #longLabel SNV Frequencies: Mexico City Prospective Study (MCPS)
         #tableBrowser off
         #parent varFreqs on
         #bigDataUrl /gbdb/$D/varFreqs/mcps/mcps.freq.vcf.gz
         #visibility pack
         #type vcfTabix
         #dataVersion May 2023 (v1.2.0)
         #priority 3
 
         track tommo60kjpn
         shortLabel Japan ToMMo 61k WGS
         longLabel SNV Frequencies: Japan 61k - ToMMo SNV+Indels
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/tommo61kjpn/tommo-61kjpn-20250616-GRCh38-snvindel-af-autosome.vcf.gz
         visibility hide
         dataVersion 2025-06-16
         priority 17
 
         track wbbc
         shortLabel China WBBC 4.5k WGS
         longLabel SNV Frequencies: Westlake BioBank for Chinese - 4,480 WGS, 4 regional Han groups
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/wbbc/wbbc.vcf.gz
         visibility hide
         dataVersion Phase I v20210103
         priority 6
 
         track chinamap
         shortLabel China ChinaMAP 10.5k WGS
         longLabel SNV Frequencies: ChinaMAP phase 1 - 10,588 WGS at ~40x, Chinese natural population
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_chinamap/chinamap.vcf.gz
         visibility hide
         dataVersion Phase 1 (v2020-03.beta)
         priority 5
         tableBrowser off
 
         track tpmi
         shortLabel Taiwan TPMI Axiom array
         longLabel SNV Frequencies: Taiwan Precision Medicine Initiative - Axiom TPM1 chip, Han Chinese
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_tpmi/tpmi.vcf.gz
         visibility hide
         dataVersion Axiom TPM1 2022-06
         priority 31
         tableBrowser off
 
         track alfaVcf
         shortLabel NCBI ALFA 408k mixed
         longLabel SNV Frequencies: NCBI ALFA (dbGaP data) - 408k mixed WGS/WES/array, 163M variants
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/alfa/ALFA.vcf.gz
         visibility hide
         dataVersion R4
         priority 20
         url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
         urlLabel NCBI Variation Page
 
         track finngen
         parent varFreqs on
         visibility hide
         type vcfTabix
         shortLabel FinnGen R12 500k imputed
         longLabel SNV Frequencies: Finland FinnGen - 500k samples, arrays, imputation used 8.5k WGS
         priority 8
         bigDataUrl /gbdb/$D/varFreqs/_finngen/finnge_R12_annotated_variants_v1.vcf.gz
         dataVersion R12
         tableBrowser off
 
         track ukbb
         parent varFreqs on
         visibility hide
         type vcfTabix
         shortLabel UK Biobank 361k imputed
         longLabel SNV Frequencies: UK Biobank Genotypes - 361k White British, Neale Lab Round 2 imputed
         priority 32
         bigDataUrl /gbdb/$D/varFreqs/ukbb/ukbb.vcf.gz
         dataVersion Neale Lab R2 08-2018
 
         track swefreq
         parent varFreqs on
         visibility hide
         type vcfTabix
         shortLabel Sweden SweGen 1k WGS
         longLabel SNV Frequencies: Sweden SweGen - 1k WGS
         priority 30
         bigDataUrl /gbdb/$D/varFreqs/_swefreq/swegen_frequencies_fixploidy_GRCh38_20190204.vcf.gz
         dataVersion 20251201
         tableBrowser off
 
         track gonl
         parent varFreqs on
         visibility hide
         type vcfTabix
         shortLabel Netherlands GoNL 498 WGS
         longLabel SNV Frequencies: Genome of the Netherlands - 250 Dutch trios
         priority 21
         bigDataUrl /gbdb/$D/varFreqs/gonl/gonl.vcf.gz
         dataVersion GRCh38 1.0
 
         track mgrb
         shortLabel Australia MGRB 4k WGS
         longLabel SNV Frequencies: Australia Medical Genome Reference Bank - 4,011 WGS
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_mgrb/MGRB.phase3.GRCh38.norm.vcf.gz
         dataVersion Phase 3
         visibility hide
         priority 3
         # no downloads as per Matt Hobbs email Jan 28 2026
         tableBrowser off
 
         track gasp
         shortLabel GenomeAsia 1.7k SNVs
         longLabel SNV Frequencies: GenomeAsia Pilot - Substitutions
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/ga100k/ga100k.subst.vcf.gz
         visibility hide
         priority 11
         dataVersion Pilot 2019 (lifted to hg38, May 2026)
 
         track gaspIndel
         shortLabel GenomeAsia 1.7k Indels
         longLabel SNV Frequencies: GenomeAsia Pilot - Indels
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/ga100k/ga100k.indels.vcf.gz
         visibility hide
         priority 10
         dataVersion Pilot 2019 (lifted to hg38, May 2026)
         html gasp
 
         track abraom
         shortLabel Brazil ABraOM 1k WGS
         longLabel SNV Frequencies: ABraOM Brazil - 1,171 unrelated individuals
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/abraom/abraom.vcf.gz
         visibility hide
         priority 4
         dataVersion SABE-WGS-1171 Sep 2020
 
         track indigenomes
         shortLabel India IndiGenomes 1k WGS
         longLabel SNV Frequencies: IndiGenomes India - 1,029 samples
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/indigenomes/IndiGenomes_Variants.vcf.gz
         visibility hide
         priority 16
         dataVersion IndiGen pilot (Jain 2021)
 
         track genomeindia
         shortLabel India GenomeIndia 9.7k WGS
         longLabel SNV Frequencies: GenomeIndia - 9,768 WGS, 83 populations (Bhattacharyya 2025)
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_genomeindia/genomeindia.vcf.gz
         tableBrowser off
         visibility hide
         dataVersion 9768GI_SummaryStats (Apr 2025)
         priority 15
 
         track kova
         shortLabel Korea KOVA 5.3k mixed
         longLabel SNV Frequencies: KOVA Korea - 5305 samples, 1.9k WGS+3.4k WES
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_kova/kova.v7.vcf.gz
         visibility hide
         priority 18
         tableBrowser off
         dataVersion V7
 
         track npm
         shortLabel Singapore NPM 9.7k WGS
         longLabel SNV Frequencies: NPM Singapore - 9,770 WGS samples
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_npm/SG10K_Health_r5.3.2.sites.vcf.bgz
         visibility hide
         priority 28
         tableBrowser off
         dataVersion r5.3.2
 
         track hrc
         shortLabel HRC 30k WGS
         longLabel SNV Frequencies: Haplotype Reference Consortium - 30k WGS (excl. 1000 Genomes)
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/hrc/hrc.vcf.gz
         visibility hide
         priority 14
         dataVersion r1.1
 
         track saudi
         shortLabel Saudi Genome 302 WGS
         longLabel SNV Frequencies: Saudi Genome Project - 302 WGS samples
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/saudi/saudi.vcf.gz
         visibility hide
         priority 23
         dataVersion SHGP (figshare 51297884, 2025)
 
         track schema
         shortLabel SCHEMA 121k WES Sz
         longLabel SNV Frequencies: SCHEMA Schizophrenia Exome Meta-Analysis - WES 24k cases, 97k controls
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/schema/SCHEMA_variant_results_withAF.vcf.gz
         visibility hide
         dataVersion 2022
         priority 24
         url https://schema.broadinstitute.org/
         urlLabel SCHEMA Browser
 
         track mxbFreq
         shortLabel Mexico Biobank 6k Array
         longLabel SNV Frequencies: Mexico Biobank - 6,011 individuals, genotyping array
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_mxb/mxb.freq.vcf.gz
         visibility hide
         dataVersion Nov 2025 (hg38 lift)
         tableBrowser off
         priority 19
 
         track sgdpFreq
         shortLabel SGDP 279 WGS
         longLabel SNV Frequencies: Simons Genome Diversity Project - 279 WGS, 142 populations
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/sgdpFreq/sgdp.freq.vcf.gz
         visibility hide
         dataVersion 2016-12-07 (hg38 lift)
         priority 27
 
         track gregor
         shortLabel GREGoR R4 3.6k WGS
         longLabel SNV Frequencies: GREGoR Consortium - Release 4, 3,624 WGS samples, rare disease families
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/gregor/gregor.vcf.gz
         visibility hide
         dataVersion R04 (Oct 2025)
         priority 13
 
         track hgdp1kFreq
         shortLabel gnomAD HGDP+1kG 4k WGS
         longLabel SNV Frequencies: gnomAD HGDP + 1000 Genomes - 4,094 WGS, 80 populations
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/hgdp1kFreq/hgdp1k.freq.vcf.gz
         visibility hide
         dataVersion v3.1.2
         priority 12
 
         track ga4kSnv
         shortLabel GA4K 552 PacBio LR
         longLabel SNV Frequencies: GA4K Children's Mercy - 552 PacBio HiFi WGS, pediatric RD
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/ga4k/ga4kSnv.vcf.gz
         visibility hide
         dataVersion Cohen 2022 release
         priority 9
 
         track colorsDbSnv
         shortLabel CoLoRSdb 1k LR SNV/Ind
         longLabel SNV Frequencies: CoLoRSdb v1.2.0 - 1,027 PacBio HiFi WGS, SNV/indel callset
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/colorsDb/colorsDbSnv.vcf.gz
         visibility hide
         dataVersion v1.2.0
         priority 7
 
         track svatalogSnv
         shortLabel SVatalog 101 WGS
         longLabel SNV Frequencies: GWAS SVatalog - 101 samples, 10X Genomics linked-read SNPs
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/svatalog/svatalog.vcf.gz
         visibility hide
         dataVersion Chirmade 2025 release
         priority 29
 
         track tishkoff180
         shortLabel 12 Afr Pops 180 WGS
         longLabel SNV Frequencies: 180 WGS from 12 Indigenous African Populations (Fan 2023)
         type vcfTabix
         parent varFreqs on
         bigDataUrl /gbdb/$D/varFreqs/_tishkoff/tishkoff180.vcf.gz
         visibility hide
         dataVersion Cell 2023 (hg19 lift)
         tableBrowser off
         priority 1