78988553dd9b460c26f0b9f21f15a1aacfad9dab lrnassar Fri Aug 21 15:44:40 2026 -0700 Polish pass on the mouseDevTimecourse tracks after a Playwright QA sweep. refs #37001 Sentence-case the tissue names and the facet column titles, so the barChart facet filter reads "Tissue / Spleen" rather than "tissue / spleen" and the bigWig matrix reads "Spleen". Only the first character is upper-cased. Added sentenceCaseTissues.sh, which does the .facets and .categories files and is idempotent, since the hub still ships lower-case and this has to be replayed after any refetch. The count and color column names are deliberately left lower-case: barChartUi.c requires a field literally named "count" to load the file at all, and facetedTable.c keys its merge logic on "count", "color" and "val". Renaming the faceted columns means trackDb matches, so the stanzas now read barChartFacets Tissue,Timepoint. Set priority on the container children so the default-visible M21 TPM sorts first and the signal composite sorts last. The composite needs an explicit value; without one it inherits the superTrack's 0.6 and floats to the top. Fix the All reads view, which was inert. Every all-reads subtrack shipped parent off, so switching the view to full revealed nothing. The view's own visibility already gates drawing, so the subtrack state should not encode the view as well. The default image is unchanged at 78 unique-reads rep1 tracks, and switching the view to full now yields 156. This also makes the Rep 2 toggle symmetric across the two views. Rename the bigWig subGroup3 display label from Age to Timepoint, matching the barChart facet and the .facets column. The group name stays "age" because dimensions and sortOrder reference it by name. Add relatedTracks cross-links between the mm10 container and Tabula Muris. Not Tabula Muris Senis, which is not on the RR. Description pages: reorder the mm10 subtrack list to match the new display order, "sub tracks" to "subtracks", capitalise the colour legend tissue names, and correct the mm39 Il11ra2 note - the gene appears three times, two of them stacked at one position and sharing a details page, with the third 497 kb away. Makedocs record the casing step, its ordering constraint relative to the reorder and colour steps, and the count/color naming constraint. diff --git src/hg/makeDb/trackDb/mouse/mm10/mouseDevTimecourse.ra src/hg/makeDb/trackDb/mouse/mm10/mouseDevTimecourse.ra index bd341d8d58a..a01913f1b08 100644 --- src/hg/makeDb/trackDb/mouse/mm10/mouseDevTimecourse.ra +++ src/hg/makeDb/trackDb/mouse/mm10/mouseDevTimecourse.ra @@ -1,84 +1,88 @@ track mouseDevTimecourse superTrack on show shortLabel ENCODE Expression longLabel ENCODE developmental time course bulk RNA-seq gene expression group regulation priority 0.6 pennantIcon New red ../goldenPath/newsarch.html#TBD "Released TBD" html mouseDevTimecourse track developmentTimecourseM4mm10TPM parent mouseDevTimecourse + priority 3 type bigBarChart shortLabel Timecourse M4 TPM longLabel ENCODE mouse development time course GENCODE M4 TPM visibility hide barChartUnit TPM - barChartFacets tissue,timepoint + barChartFacets Tissue,Timepoint barChartStretchToItem on maxWindowToDraw 10000000 barChartMetric sample labelFields name,name2 defaultLabelFields name bigDataUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_TPM_M4_mm10.bb barChartCategoryUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_M4.categories barChartStatsUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_M4.facets singleCellColumnNames off html developmentTimecourseM4mm10TPM track developmentTimecourseM4mm10FPKM parent mouseDevTimecourse + priority 4 type bigBarChart shortLabel Timecourse M4 FPKM longLabel ENCODE mouse development time course GENCODE M4 FPKM visibility hide barChartUnit FPKM - barChartFacets tissue,timepoint + barChartFacets Tissue,Timepoint barChartStretchToItem on maxWindowToDraw 10000000 barChartMetric sample labelFields name,name2 defaultLabelFields name bigDataUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_FPKM_M4_mm10.bb barChartCategoryUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_M4.categories barChartStatsUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_M4.facets singleCellColumnNames off html developmentTimecourseM4mm10FPKM track developmentTimecourseM21mm10TPM parent mouseDevTimecourse + priority 1 type bigBarChart shortLabel Timecourse M21 TPM longLabel ENCODE mouse development time course GENCODE M21 TPM visibility pack barChartUnit TPM - barChartFacets tissue,timepoint + barChartFacets Tissue,Timepoint barChartStretchToItem on maxWindowToDraw 10000000 barChartMetric sample labelFields name,name2 defaultLabelFields name bigDataUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_TPM_M21_mm10.bb barChartCategoryUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_M21.categories barChartStatsUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_M21.facets singleCellColumnNames off html developmentTimecourseM21mm10TPM track developmentTimecourseM21mm10FPKM parent mouseDevTimecourse + priority 2 type bigBarChart shortLabel Timecourse M21 FPKM longLabel ENCODE mouse development time course GENCODE M21 FPKM visibility hide barChartUnit FPKM - barChartFacets tissue,timepoint + barChartFacets Tissue,Timepoint barChartStretchToItem on maxWindowToDraw 10000000 barChartMetric sample labelFields name,name2 defaultLabelFields name bigDataUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_FPKM_M21_mm10.bb barChartCategoryUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_M21.categories barChartStatsUrl /gbdb/mm10/mouseDevTimecourse/mouse_development_M21.facets singleCellColumnNames off html developmentTimecourseM21mm10FPKM