306e80a01217beb1baf7bc65a59cf3c70cabf334
lrnassar
  Wed Jul 9 18:08:43 2025 -0700
Updating track to reflect that it is now built from GENCODE, not UCSC Genes, refs #25918

diff --git src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra
index 4fa8bc4527c..6e86c025eda 100644
--- src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra
+++ src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra
@@ -1,56 +1,61 @@
 # Local declaration so that local gold.html is picked up.
 track gold override
 html gold
 
 # Local declaration so that local gap.html is picked up.
 track gap override
 html gap
 
 #track chainNetCalJac4 override
 #chainMinScore 3000
 
 #track ensGene override
 #priority 2.02
 
 track xenoRefGene override
 visibility hide
 #priority 2.03
 
 track mrna override
 priority 2.1
 
 searchTable gold
 shortCircuit 1
 termRegex [ABCFLM][ACEFGHLNOPQRTUXY][AEKJQR0-9]+(\.[0-9_]+)?
 query select chrom,chromStart,chromEnd,frag from %s where frag like '%s%%'
 searchPriority 8
 
 #include evaSnp.ra
 include xenoRefGene.ra
 include trackDb.35way.ra
 include trackDb.chainNet.ra
 include trackDb.syntenicNet.ra alpha
 include trackDb.rbestNet.ra alpha
 include trackDb.gencode.ra
 include knownGene.ra
 #include knownGene.alpha.ra alpha
 include knownGeneArchive.ra
 include reMap.ra
 
 include liftOverMm10.ra
 
 track vistaEnhancersBb
 shortLabel VISTA Enhancers
 longLabel VISTA Enhancers
 group regulation
 url https://enhancer.lbl.gov/vista/element?vistaId=$$
 type bigBed 9 +
 mouseOverField patternExpression
 urlLabel View on the VISTA Enhancer Browser
 bigDataUrl /gbdb/mm39/vistaEnhancers/vistaEnhancers.bb
 itemRgb on
 pennantIcon Updated red ../goldenPath/newsarch.html#050525 "Updated May 5, 2025"
 
 include ../refSeqComposite.mm10.mm39.ra
 
 include cytoBand.ra
+
+track ucscGenePfam override
+shortLabel Pfam in GENCODE
+longLabel Pfam Domains in GENCODE Genes
+html gencodePfam