Commits for lrnassar

b4cbd94c19445de87aea4ed3defbaa7c288e78e9 Thu Jun 19 09:50:42 2025 -0700

Clarifying what is needed to enable the default cart feature. We were missing the hg.conf statement, and also adding the statement to our file of all the possible statements, refs #35862
- src/hg/htdocs/goldenPath/help/docker.html - lines changed 4, context: html, text, full: html, text
- src/product/ex.hg.conf - lines changed 5, context: html, text, full: html, text

394790c4392a67d2837427efb96b45038b2d5364 Thu Jun 19 10:07:15 2025 -0700

Adding a line break and removing the underscore. No RM.
- src/hg/makeDb/trackDb/human/revel.html - lines changed 3, context: html, text, full: html, text

cbe3d85f5bb91ffbd522c69ec3477c47af157320 Thu Jun 19 10:20:05 2025 -0700

Needed one more line break.
- src/hg/makeDb/trackDb/human/revel.html - lines changed 1, context: html, text, full: html, text

f66b9b0cdf55fa50d309b190b8f3137b5df39874 Thu Jun 19 11:28:08 2025 -0700

Updating link as requested by b0b.
- src/hg/htdocs/indexMeetings.html - lines changed 1, context: html, text, full: html, text

487b850e5dbc6e21882e790614aaecfde9236171 Thu Jun 19 13:21:35 2025 -0700

Feedback from CR, refs #35930
- src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 2, context: html, text, full: html, text

735f7be7f5d6854830d5ef7cc5387fc29027778d Thu Jun 19 18:21:58 2025 -0700

Making improvements to the panelApp otto job, primarily in support of the new panelApp Australia track. 1. Adding our standard check that will cause an exit if the item count is more than 10% different. 2. Tweak Max's code to fix an issue when specifying the specific panels to extract, this is used for the Australia genes track. 3. Remove the check that only made track items if the versions was >.99, we now make track items out of everything. 4. Max had accidentally specified the two 'onlyPanels' for Genomics England, but it should be Australia. Refs #35758
- src/hg/utils/otto/panelApp/doPanelApp.py - lines changed 52, context: html, text, full: html, text

d60064988c9b779b2045522e87ed2ce7d2633a3e Thu Jun 19 18:24:21 2025 -0700

Updated the mouseovers to use html elements such as bold and line breaks, improving readability. Also added default filters for version since I changed the track to create items from all versions, not just >.99. The Genomics England track has a default version value of 1, so even though more items are in the track the display should not be different. This change was done as recommended by the panelApp Australia collaborators, so that one displays all panels regardless of version. Refs #35758
- src/hg/makeDb/trackDb/human/panelApp.alpha.ra - lines changed 20, context: html, text, full: html, text

cba91350b2e4ad93790c0e76afb9b56660fb8c5a Thu Jun 19 18:25:15 2025 -0700

Updating the desc page with the new rules used in the track generation, primarily that we are not just using versions >.99. Refs #35758
- src/hg/makeDb/trackDb/human/panelApp.html - lines changed 18, context: html, text, full: html, text

ac62db98d6c7994d55feb2ae1723cd4d2c5c8242 Thu Jun 19 18:28:01 2025 -0700

Swapping to the new otto script. The Genomics England tracks should be the same display, but now with more items filtered by default due to lax version numbers. The main changes here are the consolidation of multiple scripts into one, and the addition of a panelApp Australia track. Refs #35758
- src/hg/utils/otto/otto.crontab - lines changed 1, context: html, text, full: html, text