9b5f3d76a56c8f5e1957869c0faeea4be5182256
markd
  Sat May 31 12:56:22 2025 -0700
GENCODE Versions V48lift38

diff --git src/hg/makeDb/doc/hg19.gencode.txt src/hg/makeDb/doc/hg19.gencode.txt
index 6d102c7ebba..2ba63c2e38e 100644
--- src/hg/makeDb/doc/hg19.gencode.txt
+++ src/hg/makeDb/doc/hg19.gencode.txt
@@ -1361,54 +1361,55 @@
 
     # if final release, Update 'Release Notes' 
     #  human/hg19/wgEncodeGencodeSuper.html
 
     jkmake DBS=hg19
 
     # check joiner 
     pushd /hive/data/genomes/hg19/bed/gencodeV${ver}/hgcImport${pre}
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # check tracks in browser sandbox
     # commit all
     jkmake DBS=hg19 alpha
 #########################################################################
 2025-02-05: import of UCSC GENCODE group processing of GENCODE V48lift38 pre-release for GENCODE Versions (markd)
+2025-05-31: final release
    # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release type and versions
 
    # pre-release shell variables 
        ver=48lift37
        ensver=114
        pre="Pre"
        ensdate='Feb 2025 pre-release' 
    # release shell variables 
        ver=48lift37
        ensver=114
        pre=""
-       ensdate='Mar 2025' 
+       ensdate='May 2025' 
     
     # download, build and load tables
     mkdir -p /hive/data/genomes/hg19/bed/gencodeV${ver}/hgcImport${pre}
     pushd /hive/data/genomes/hg19/bed/gencodeV${ver}/hgcImport${pre}
 
     (time nice make -O -j 32 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out&
 
     # compare tables from previous release to see if number changed makes
     # sense.  Results are in gencode-cmp.tsv
 
     # generate trackDb and joiner blurb
-    pushd ~/kent/src/hg/makeDb/trackDb
+    pushd
     ../outside/gencode/bin/gencodeGenerateTrackDbs hg19 ${ver} ${ensver} "${ensdate}"
 
     # edit human/hg19/trackDb.gencode.ra to add new .ra file include
     # edit all.joiner to add ~/tmp/gencodeV${ver}.joiner
 
     # if final release, Update 'Release Notes' 
     #  human/hg19/wgEncodeGencodeSuper.html
 
     jkmake DBS=hg19
 
     # check joiner 
     pushd /hive/data/genomes/hg19/bed/gencodeV${ver}/hgcImport${pre}
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # check tracks in browser sandbox