20a6e56606f88189952c7fac787e6c0b8275fbc8 markd Sat May 31 12:28:24 2025 -0700 GENCODE Versions V48 diff --git src/hg/makeDb/doc/hg38/gencode.txt src/hg/makeDb/doc/hg38/gencode.txt index adfde96e559..541b06b3fa5 100644 --- src/hg/makeDb/doc/hg38/gencode.txt +++ src/hg/makeDb/doc/hg38/gencode.txt @@ -1425,42 +1425,43 @@ # if final release, Update 'Release Notes' # human/hg38/wgEncodeGencodeSuper.html jkmake DBS=hg38 # check joiner pushd /hive/data/genomes/hg38/bed/gencodeV${ver}/hgcImport${pre} make -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck # check tracks in browser sandbox # commit all jkmake DBS=hg38 alpha ######################################################################### 2025-02-05: import of UCSC GENCODE group processing of GENCODE V48 pre-release for GENCODE Versions (markd) +2025-05-31: final release # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release type and versions # pre-release shell variables ver=48 ensver=114 pre="Pre" ensdate='Feb 2025 pre-release' # release shell variables ver=48 ensver=114 pre="" - ensdate='Mar 2025' + ensdate='May 2025' # download, build and load tables mkdir -p /hive/data/genomes/hg38/bed/gencodeV${ver}/hgcImport${pre} pushd /hive/data/genomes/hg38/bed/gencodeV${ver}/hgcImport${pre} (time nice make -O -j 32 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out& # compare tables from previous release to see if number changed makes # sense. Results are in gencode-cmp.tsv # generate trackDb and joiner blurb pushd ~/kent/src/hg/makeDb/trackDb ../outside/gencode/bin/gencodeGenerateTrackDbs hg38 ${ver} ${ensver} "${ensdate}"