1b34ddd99f21b5b31c9c0b65ed7957fe29d29fb9 markd Tue Aug 19 10:21:11 2025 -0700 updates to recount3 tracks (not complete) diff --git src/hg/makeDb/trackDb/mouse/mm10/recount3.ra src/hg/makeDb/trackDb/mouse/mm10/recount3.ra index 9f1ca242df3..05452988ba4 100644 --- src/hg/makeDb/trackDb/mouse/mm10/recount3.ra +++ src/hg/makeDb/trackDb/mouse/mm10/recount3.ra @@ -1,29 +1,27 @@ track recount3 shortLabel recount3 longLabel Recount 3 SRA introns group rna type bigBed 9 + visibility pack -spectrum on -scoreMax 225 +itemRgb on labelFields none maxWindowToDraw 10000000 bigDataUrl /gbdb/$D/recount3/srav1m.bb filterLabel.strand Strand filterType.strand multiple filterValues.strand +,-,. filterLabel.readcount Filter by supporting split reads filterByRange.readcount on filter.readcount 10000:2000000000 filterLimits.readcount 0:2000000000 filterLabel.size Filter by intron size filterByRange.size on filter.size 30:100000 filterLabel.sjPair Filter by splice junctions (format GT/AG) -filterType.sjPair regexp -filterText.sjPair ^GT/AG$ +filterType.sjPair wildcard +filterText.sjPair * mouseOver $readcount supporting split reads
Strand $strand
Size $size
Splice donor $donor
Splice acceptor $acceptor iframeUrl https://snaptron.cs.jhu.edu/snaptron-studies/jxn2studies?compilation=srav1m&jid=$$&coords=$S:${-$} iframeOptions height='300' width='1000' scrolling='yes' -decorator.default.bigDataUrl /gbdb/$D/recount3/decsrav1m.bb