1b34ddd99f21b5b31c9c0b65ed7957fe29d29fb9
markd
Tue Aug 19 10:21:11 2025 -0700
updates to recount3 tracks (not complete)
diff --git src/hg/makeDb/trackDb/mouse/mm10/recount3.ra src/hg/makeDb/trackDb/mouse/mm10/recount3.ra
index 9f1ca242df3..05452988ba4 100644
--- src/hg/makeDb/trackDb/mouse/mm10/recount3.ra
+++ src/hg/makeDb/trackDb/mouse/mm10/recount3.ra
@@ -1,29 +1,27 @@
track recount3
shortLabel recount3
longLabel Recount 3 SRA introns
group rna
type bigBed 9 +
visibility pack
-spectrum on
-scoreMax 225
+itemRgb on
labelFields none
maxWindowToDraw 10000000
bigDataUrl /gbdb/$D/recount3/srav1m.bb
filterLabel.strand Strand
filterType.strand multiple
filterValues.strand +,-,.
filterLabel.readcount Filter by supporting split reads
filterByRange.readcount on
filter.readcount 10000:2000000000
filterLimits.readcount 0:2000000000
filterLabel.size Filter by intron size
filterByRange.size on
filter.size 30:100000
filterLabel.sjPair Filter by splice junctions (format GT/AG)
-filterType.sjPair regexp
-filterText.sjPair ^GT/AG$
+filterType.sjPair wildcard
+filterText.sjPair *
mouseOver $readcount supporting split reads
Strand $strand
Size $size
Splice donor $donor
Splice acceptor $acceptor
iframeUrl https://snaptron.cs.jhu.edu/snaptron-studies/jxn2studies?compilation=srav1m&jid=$$&coords=$S:${-$}
iframeOptions height='300' width='1000' scrolling='yes'
-decorator.default.bigDataUrl /gbdb/$D/recount3/decsrav1m.bb