644eae7700eb62343b142a44258ee91a944f4853
max
  Tue Jun 9 15:17:03 2026 -0700
lrSv: rebuild merged lrSvAll track with HPRC v2.1 data

Repoint the HPRC entry in databases.tsv from the removed v2.0 hprc2.bb to
the new hprc2v21.bb and re-run the merge. The combined track now holds
2,359,011 variants (was 2,694,871); the drop is the smaller v2.1 HPRC
callset. Regenerated lrSvAll.ra and updated the overview table on the
container page. The HPRC Jasmine track is intentionally not part of the
merge, refs #36258

diff --git src/hg/makeDb/scripts/lrSv/databases.tsv src/hg/makeDb/scripts/lrSv/databases.tsv
index 1f392ca0093..a22cff440af 100644
--- src/hg/makeDb/scripts/lrSv/databases.tsv
+++ src/hg/makeDb/scripts/lrSv/databases.tsv
@@ -11,22 +11,22 @@
 #                    (typically "AC", but "samples" for gustafson)
 #   affField       - SPLIT mode: expression for affected AC (supports "a+b")
 #   healField      - SPLIT mode: expression for healthy AC
 #   afField        - autoSql field name(s) to use for max-AF aggregation,
 #                    comma-separated. "" means no AF available.
 # Order here = order of per-db columns in the output bigBed.
 #key	label	bbPath	valueField	valueLabel	affField	healField	afField
 CoLoRSdb	CoLoRSdb 1,427 (PacBio)	/gbdb/hg38/lrSv/colorsDb/sv.hg38.bb	AC	AC			AF
 1000G-ONT-Vienna	1KG ONT Vienna 1,019	/gbdb/hg38/lrSv/1kgOnt.bb	AC	AC			alleleFreq
 1000G-ONT	1KG ONT 100 (Gustafson)	/gbdb/hg38/lrSv/gustafson.bb	sampleCount	samples
 AoU1K	All of Us 1,027 (PacBio)	/gbdb/hg38/lrSv/aou1k.bb	AC	AC			afAfr,afAmr,afEas,afEur,afSas
 Han945	Han Chinese 945	/gbdb/hg38/lrSv/han945.bb	AC	AC			alleleFreq
 TommoJapan	ToMMo 333 (Japanese)	/gbdb/hg38/lrSv/tommoJp.bb	AC	AC			alleleFreq
 GA4K	GA4K 502 (rare disease)	/gbdb/hg38/lrSv/ga4kSv.bb	AC	AC			alleleFreq
 deCODE	deCODE 3,622 (Icelandic)	/gbdb/hg38/lrSv/decodeSv.bb	UNKNOWN	AC
-HPRCv2	HPRC v2 233	/gbdb/hg38/lrSv/hprc2.bb	AC	AC			alleleFreq
+HPRCv2.1	HPRC v2.1 233	/gbdb/hg38/lrSv/hprc2v21.bb	AC	AC			alleleFreq
 HGSVC2	HGSVC2 32	/gbdb/hg38/lrSv/hgsvc2.bb	AC	AC
 HGSVC3	HGSVC3 65	/gbdb/hg38/lrSv/hgsvc3.bb	AC	AC
 KimPD	Kim PD Brain 100	/gbdb/hg38/lrSv/kwanho.bb	SPLIT	AC	acPd+acIlbd	acHc	afPd,afHc,afIlbd
 ArabUAE53	Arab APR 53	/gbdb/hg38/lrSv/apr.bb	AC	AC			alleleFreq
 China58	CPC 58 (Chinese)	/gbdb/hg38/lrSv/cpc1.bb	AC	AC			alleleFreq
 Svatalog101	SVatalog 101	/gbdb/hg38/lrSv/chirmade101.bb	UNKNOWN	AC