644eae7700eb62343b142a44258ee91a944f4853
max
  Tue Jun 9 15:17:03 2026 -0700
lrSv: rebuild merged lrSvAll track with HPRC v2.1 data

Repoint the HPRC entry in databases.tsv from the removed v2.0 hprc2.bb to
the new hprc2v21.bb and re-run the merge. The combined track now holds
2,359,011 variants (was 2,694,871); the drop is the smaller v2.1 HPRC
callset. Regenerated lrSvAll.ra and updated the overview table on the
container page. The HPRC Jasmine track is intentionally not part of the
merge, refs #36258

diff --git src/hg/makeDb/trackDb/human/lrSv.html src/hg/makeDb/trackDb/human/lrSv.html
index 7d5560c1eac..803d8904725 100644
--- src/hg/makeDb/trackDb/human/lrSv.html
+++ src/hg/makeDb/trackDb/human/lrSv.html
@@ -33,33 +33,33 @@
   <th>N samples</th>
   <th>Cohort / disease</th>
   <th>Disease cases</th>
   <th>Coverage</th>
   <th>SV count</th>
   <th>Min</th>
   <th>Median</th>
   <th>Max</th>
 </tr>
 <tr>
   <td><a href="hgTrackUi?g=lrSvAll"><b>All merged</b></a></td>
   <td>&mdash;</td>
   <td>All long-read SV datasets merged on identical position+type+length, with per-database AC</td>
   <td>mixed</td>
   <td>mixed (PacBio HiFi, ONT)</td>
-  <td>2,694,871</td>
-  <td>50</td>
-  <td>200</td>
+  <td>2,359,011</td>
+  <td>0</td>
+  <td>147</td>
   <td>190,088,223</td>
 </tr>
 <tr>
   <td><a href="hgTrackUi?g=colorsDbSv">CoLoRSdb</a></td>
   <td>1,427</td>
   <td>Consortium of Long-Read Sequencing, joint callset</td>
   <td>No</td>
   <td>mixed (HiFi)</td>
   <td>426,239</td>
   <td>20</td>
   <td>33</td>
   <td>101,381</td>
 </tr>
 <tr>
   <td><a href="hgTrackUi?g=han945Sv">Han 945</a></td>