644eae7700eb62343b142a44258ee91a944f4853
max
  Tue Jun 9 15:17:03 2026 -0700
lrSv: rebuild merged lrSvAll track with HPRC v2.1 data

Repoint the HPRC entry in databases.tsv from the removed v2.0 hprc2.bb to
the new hprc2v21.bb and re-run the merge. The combined track now holds
2,359,011 variants (was 2,694,871); the drop is the smaller v2.1 HPRC
callset. Regenerated lrSvAll.ra and updated the overview table on the
container page. The HPRC Jasmine track is intentionally not part of the
merge, refs #36258

diff --git src/hg/makeDb/trackDb/human/lrSvAll.ra src/hg/makeDb/trackDb/human/lrSvAll.ra
index 60193aa68f8..c3311db9d3d 100644
--- src/hg/makeDb/trackDb/human/lrSvAll.ra
+++ src/hg/makeDb/trackDb/human/lrSvAll.ra
@@ -1,29 +1,29 @@
 # AUTO-GENERATED by ~/kent/src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py
 # Do not edit by hand - re-run the merge script and re-commit.
 
     track lrSvAll
     parent lrSv
     bigDataUrl /gbdb/$D/lrSv/lrSvAll.bb
     shortLabel All LR SVs merged
     longLabel All long-read SVs merged across subtracks by exact position, with per-database AC
     type bigBed 9 +
     itemRgb on
     visibility pack
     mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen sources=$sources AF=$minAF-$maxAF AC=$AC
     searchIndex name
-    filterValues.sources CoLoRSdb|CoLoRSdb 1427 (PacBio),1000G-ONT-Vienna|1KG ONT Vienna 1019,1000G-ONT|1KG ONT 100 (Gustafson),AoU1K|All of Us 1027 (PacBio),Han945|Han Chinese 945,TommoJapan|ToMMo 333 (Japanese),GA4K|GA4K 502 (rare disease),deCODE|deCODE 3622 (Icelandic),HPRCv2|HPRC v2 233,HGSVC2|HGSVC2 32,HGSVC3|HGSVC3 65,KimPD|Kim PD Brain 100,ArabUAE53|Arab APR 53,China58|CPC 58 (Chinese),Svatalog101|SVatalog 101
+    filterValues.sources CoLoRSdb|CoLoRSdb 1427 (PacBio),1000G-ONT-Vienna|1KG ONT Vienna 1019,1000G-ONT|1KG ONT 100 (Gustafson),AoU1K|All of Us 1027 (PacBio),Han945|Han Chinese 945,TommoJapan|ToMMo 333 (Japanese),GA4K|GA4K 502 (rare disease),deCODE|deCODE 3622 (Icelandic),HPRCv2.1|HPRC v2.1 233,HGSVC2|HGSVC2 32,HGSVC3|HGSVC3 65,KimPD|Kim PD Brain 100,ArabUAE53|Arab APR 53,China58|CPC 58 (Chinese),Svatalog101|SVatalog 101
     filterType.sources multipleListOr
     filterLabel.sources Source Database
     filterValues.svType DEL,INS,DUP,INV,CPX,MIXED,INSDEL,CNV,BND,TRA,MEI
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:30000000
     filterByRange.svLen on
     filterLabel.svLen SV Length (bp)
     filter.insLen 0:600000
     filterByRange.insLen on
     filterLabel.insLen Insertion Length (bp)
     filter.maxAF 0:1
     filterByRange.maxAF on
     filterLimits.maxAF 0:1
     filterLabel.maxAF Max Allele Frequency (across DBs)