cc9815dcc544d9bfaa660557feefa1ab4364ecb6 max Thu Jun 19 05:45:56 2025 -0700 add triangles to clinvar tracks, add clinvar lollies to archive, add a validation to the clinvar sub lollies script, refs #35750 diff --git src/hg/utils/otto/clinvar/clinvarSubLolly.as src/hg/utils/otto/clinvar/clinvarSubLolly.as new file mode 100644 index 00000000000..30a95e25b75 --- /dev/null +++ src/hg/utils/otto/clinvar/clinvarSubLolly.as @@ -0,0 +1,21 @@ +table clinsub +"Clinvar Submissions" + ( + #bed 9 + string chrom; "Chromosome (or contig, scaffold, etc.)" + uint chromStart; "Start position in chromosome" + uint chromEnd; "End position in chromosome" + string name; "Name of item" + uint score; "P: 5, LP: 4, VUS: 3, LB: 2, B: 1, OTH: 0" + char[1] strand; "+ or -" + uint thickStart; "Start of where display should be thick (start codon)" + uint thickEnd; "End of where display should be thick (stop codon)" + uint reserved; "Used as itemRgb as of 2004-11-22" + + #extra fields + uint lollySize; "Size of lollipop" + lstring changes; "changes + lstring variantIds; "variantIds + lstring subIds; "subIds + lstring _mouseOver; "mouseOver" + )