66d4db32ebb42c4b5005e6c39a733bc1b75457d0
max
  Mon Dec 8 08:06:52 2025 -0800
fixing clinvar bigbed type bug, refs #36810

diff --git src/hg/utils/otto/clinvar/doUpdate.sh src/hg/utils/otto/clinvar/doUpdate.sh
index a56d13dd9a5..3457f88338c 100755
--- src/hg/utils/otto/clinvar/doUpdate.sh
+++ src/hg/utils/otto/clinvar/doUpdate.sh
@@ -1,14 +1,14 @@
 #!/bin/bash
 set -o errexit -o pipefail
 export PATH=$PATH:/cluster/bin/x86_64/ # for bedSort and bedToBigBed
 cd /hive/data/outside/otto/clinvar/
 if [ "$1" == "--alpha" ]; then
         ./clinVarToBed --auto --alpha
-        ./clinvarSubLolly 0 --alpha
+        #./clinvarSubLolly 0 --alpha
 elif [ "$1" == "-nocheck" ]; then
         ./clinVarToBed --auto
-        ./clinvarSubLolly 0 
+        #./clinvarSubLolly 0 
 else
-        ./clinVarToBed --auto --maxDiff 0.1
-        ./clinvarSubLolly 0.1
+        ./clinVarToBed --auto --maxDiff 0.1 --onlyNew
+        #./clinvarSubLolly 0.1
 fi