bbabbd5d2566d47d923d51dbe350634783455999 mspeir Sun Oct 26 12:14:52 2025 -0700 change soe to gi, refs #35031 diff --git src/hg/htdocs/goldenPath/help/covidBrowser.html src/hg/htdocs/goldenPath/help/covidBrowser.html index 9b8fdfa0151..feb989ef598 100755 --- src/hg/htdocs/goldenPath/help/covidBrowser.html +++ src/hg/htdocs/goldenPath/help/covidBrowser.html @@ -229,31 +229,31 @@ You can upload your data on the reference genome in <a href="../../FAQ/FAQformat.html">nearly any format</a> with our <a href="../../cgi-bin/hgCustom">Custom Track tool</a>. If you have unaligned sequence, you can use our <a href="../../cgi-bin/hgBlat">BLAT sequence alignment tool</a> to get coordinates and base-by-base comparison with any reference genome. We also display formatted data as <a href="hgTrackHubHelp.html">Track Hubs</a> and curate a list of user-submitted <a href="../../cgi-bin/hgHubConnect?#publicHubs">Public Track Hubs</a>. </p> <h3>Downloads, Table Browser, JSON API, SQL</h3> <p> As part of our open-source, open-access philosophy, we try to make it as easy as possible for researchers to download entire datasets or filtered subsets. Each track description page has a Data Access section which points users to our main options for data download. For downloading complete datasets, our -<a href="http://hgdownload.soe.ucsc.edu/downloads.html#SARS-CoV-2">SARS-CoV-2 download +<a href="http://hgdownload.gi.ucsc.edu/downloads.html#SARS-CoV-2">SARS-CoV-2 download directory</a> provides access to all our source files for transparency and reproducibility. Our <a href="../../cgi-bin/hgTables">Table Browser</a> tool lets users interact with our data using a variety of filters based on score, identifiers, or any other field. Table Browser also allows users to convert data into multiple different formats (e.g. BED, GTF) and to access different formatted sequence outputs (in FASTA format).</p> <p> We have a <a href="api.html">JSON API</a> which can be programmatically called and return any dataset in its entirety or as a filtered subset based on documented input parameter. We also offer a <a href="mysql.html">Public SQL server</a> for similar flexible, automatic way to access genomic data and annotations. Along with this particular virus genome browser, we have thousands of genomes available for visualization and analysis from our <a href="../../cgi-bin/hgGateway"> genome assemblies</a> gateway page. </p>