bbabbd5d2566d47d923d51dbe350634783455999
mspeir
  Sun Oct 26 12:14:52 2025 -0700
change soe to gi, refs #35031

diff --git src/hg/htdocs/goldenPath/help/customTrackText.html src/hg/htdocs/goldenPath/help/customTrackText.html
index fd47c9d4827..e13d50de0c7 100755
--- src/hg/htdocs/goldenPath/help/customTrackText.html
+++ src/hg/htdocs/goldenPath/help/customTrackText.html
@@ -776,32 +776,32 @@
 data:</p>
 <ol>
   <li>
   The <b>species or genome assembly</b> on which your annotation data is based. To automatically display
   the most recent assembly for a given organism, set the <em>org</em> parameter: <em>e.g.</em>
   <code>org=human</code>. To specify a particular genome assembly for an organism, use the
   <em>db</em> parameter, <code>db=&lt;databaseName&gt;</code>, where <em>databaseName</em> is the UCSC
   code for the genome assembly. For a list of these codes, see the Genome Browser
   <a href="/FAQ/FAQreleases.html#release1" target="_blank">FAQ</a>. Examples of this include:
   db=hg38 (Human Dec. 2013 assembly = GRCh38), db=mm10 (Mouse Dec. 2011 assembly = GRCm38).</li>
   <ul>
   <li>Additionally, particular genome assemblies, including assemblies in assembly hubs, can be specified using
   the <em>genome</em> parameter, <code>genome=&lt;databaseName&gt;</code>, which acts in the same manner as
   the <em>db</em> parameter. Here is an example using the house mouse (<i>Mus musculus</i>, 129S1_SvImJ)
   assembly hub:
-  <a href="http://genome.ucsc.edu/cgi-bin/hgTracks?genome=129S1_SvImJ&hubUrl=http://hgdownload.soe.ucsc.edu/hubs/mouseStrains/hub.txt"
-  target="_blank">http://genome.ucsc.edu/cgi-bin/hgTracks?genome=129S1_SvImJ&hubUrl=http://hgdownload.soe.ucsc.edu/hubs/mouseStrains/hub.txt</a></li>
+  <a href="http://genome.ucsc.edu/cgi-bin/hgTracks?genome=129S1_SvImJ&hubUrl=http://hgdownload.gi.ucsc.edu/hubs/mouseStrains/hub.txt"
+  target="_blank">http://genome.ucsc.edu/cgi-bin/hgTracks?genome=129S1_SvImJ&hubUrl=http://hgdownload.gi.ucsc.edu/hubs/mouseStrains/hub.txt</a></li>
   </ul>
   <li>
   The <b>genome position</b> to which the Genome Browser should initially open. This information is of the
   form <code>position=&lt;chrPosition&gt;</code>, where <em>chrPosition</em> is a chromosome number, with
   or without a set of coordinates. Examples of this include: position=chr22,
   position=chr22:15916196-31832390.</li>
   <li>
   The <b>URL of the annotation file</b> on your web-accessible location. This information is of the
   form <code>hgt.customText=&lt;url&gt;</code> or <code>hgct_customText=&lt;url&gt;</code>,
   where <em>url</em> points to the annotation file on your website.
   An example of an annotation file URL is <a href="test.bed"
   target="_blank">http://genome.ucsc.edu/goldenPath/help/test.bed</a>.</li>
 </ol>
 <p>
 Combine the above pieces of information into a URL of the following format (the information
@@ -824,31 +824,31 @@
 <p>
 If you'd like to share your annotation track with a broader audience, send the URL for your
 track&mdash;along with a description of the format, methods, and data used&mdash;to the UCSC Genome
 mailing list
 <a href="mailto:&#103;&#101;n&#111;m&#101;&#64;&#115;&#111;&#101;.&#117;&#99;s&#99;.&#101;d&#117;">&#103;&#101;n&#111;m&#101;&#64;&#115;&#111;&#101;.&#117;&#99;s&#99;.&#101;d&#117;</a>. 
 <!-- above address is genome at soe.ucsc.edu -->
 
 <a name="OPTIONAL"></a>
 <h3>Optional URL parameters</h3>
 <p>
 A special blog post discusses and provides examples of many of these parameters such as
 <code>hgct_customText=&lt;url&gt;</code>, <code>db=&lt;databaseName&gt;</code>,
 <code>hubUrl=&lt;url&gt;</code>, and <code>genome=&lt;databaseName&gt;</code> to attach
 custom tracks, track hubs, assembly hubs, and even track hubs to assembly hubs, all in a
 single URL. Read an overview of ways to share Genome Browser data views in the
-<a href="https://genome-blog.soe.ucsc.edu/blog/2021/08/13/sharing-data-with-sessions-and-urls/"
+<a href="https://genome-blog.gi.ucsc.edu/blog/2021/08/13/sharing-data-with-sessions-and-urls/"
 target="_blank">Sharing Data with Sessions and URLs</a> blog post.
 
 <a name="optParams"></a>
 <p>
 You can add other optional parameters to the URL: (Note: Display may vary if you have conflicting
 cart variables, for example having both hide all and highlight features.)
 <ul>
   <li>
   <code>guidelines=on/off</code>
   <br>
   activate or deactivate the blue guidelines
   <br>- 
   <a href="../../cgi-bin/hgTracks?db=hg19&position=chr9%3A136130563-136150630&guidelines=off" 
   target="_blank">example link</a> to switch off blue guidelines</li>
   <li>