bbabbd5d2566d47d923d51dbe350634783455999 mspeir Sun Oct 26 12:14:52 2025 -0700 change soe to gi, refs #35031 diff --git src/hg/htdocs/goldenPath/help/multiRegionHelp.html src/hg/htdocs/goldenPath/help/multiRegionHelp.html index 6e45d886e0b..2e956bc1a2a 100755 --- src/hg/htdocs/goldenPath/help/multiRegionHelp.html +++ src/hg/htdocs/goldenPath/help/multiRegionHelp.html @@ -232,31 +232,31 @@ the BED-defined regions. Although you can still zoom in to single base resolution, the outward zoom is limited to the extent of the defined regions. Scrolling upstream and downstream is also limited to the BED-defined range.

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Haplotype mode

An additional viewing mode is available on human assemblies hg17 and later: showing an alternative haplotype placed in its chromosomal context (Example 5). The haplotype is specified by entering its ID in the form chr_name_alt in the configuration window. To view the list of haplotype IDs for a given assembly, go to -http://hgdownload.soe.ucsc.edu/goldenPath/$db/bigZips/$db +http://hgdownload.gi.ucsc.edu/goldenPath/$db/bigZips/$db .chrom.sizes, where $db is the human assembly name (e.g., hg38, hg19, hg18 or hg17).

Alternatively, haplotypes can be viewed using the Alt Map... track in the Mapping and Sequencing group. Open the track and navigate to the haplotype of interest in the track window. Click on the haplotype to display its details page, then click the link Show this alternate haplotype placed on its chromosome.

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