b653d5ce539938ef5135e8650f922c5ec7f9ad5e mspeir Fri Dec 5 15:18:44 2025 -0800 adding link to orderKey form trackDb docs; adding id to orderKey element and removing repetitive text in track hub help, refs #25243 diff --git src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v3.html src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v3.html index 40b0524e07e..5e05d855d80 100755 --- src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v3.html +++ src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v3.html @@ -157,30 +157,31 @@ This page focuses on the settings found in the <a target="_blank" href="../hgTrackHubHelp.html#trackDb.txt"><code>trackDb.txt</code></a> file used in both Track Hubs and Assembly Hubs; however, this page does not describe the settings unique to Assembly Hubs. Track Hubs can display novel genomes, through a type of hub called an <a href="../hgTrackHubHelp.html#Assembly" target="_blank">Assembly Hub</a>. The <a href="../hgTrackHubHelp.html#example_genomes.txt" target="_blank"><code>genomes.txt</code></a> file for an Assembly Hub involves many additional settings not described on this page, such as <a href="../hgTrackHubHelp.html#twoBitPath" target="_blank"><code>twoBitPath</code></a> and <a href="../hgTrackHubHelp.html#defaultPos" target="_blank"><code>defaultPos</code></a> to identify the location of the sequence for the novel assembly and what default position to display. The <code>genomes.txt</code> file in Assembly Hubs also requires display information such as <a href="../hgTrackHubHelp.html#organism" target="_blank"><code>organism</code></a>, <a href="../hgTrackHubHelp.html#scientificName" target="_blank"><code>scientificName</code></a>, <a href="../hgTrackHubHelp.html#description" target="_blank"><code>description</code></a>, +<a href="../hgTrackHubHelp.html#orderKey" target="_blank"><code>orderKey</code></a>, and <a href="../hgTrackHubHelp.html#htmlPath" target="_blank"><code>htmlPath</code></a> to label the novel assembly on the gateway page. A special <a href="../hgTrackHubHelp.html#groups" target="_blank"><code>groups</code></a> setting in Assembly Hubs points to a separate text document that defines track groups under the main image (such as the first "Mapping and Sequencing" group found on almost all Browsers). Read the <a target="_blank" href="../hgTrackHubHelp.html#genomes.txt">"Create the genomes.txt file"</a> section of the Track Hub User Guide for more information, and see examples in the <a target="_blank" href="../hubQuickStartAssembly.html" target="_blank">Quick Start Guide to Assembly Hubs<a>.</p> <P>The remainder of this document is divided into the following sections and should be used as a ready reference.</P> <IMG class='toggle all' /> <I>Expand/close descriptions of settings in the sections below.</I> <OL>