bbabbd5d2566d47d923d51dbe350634783455999 mspeir Sun Oct 26 12:14:52 2025 -0700 change soe to gi, refs #35031 diff --git src/hg/htdocs/license/index.html src/hg/htdocs/license/index.html index 8cbef007fbe..b48c6ddeccd 100755 --- src/hg/htdocs/license/index.html +++ src/hg/htdocs/license/index.html @@ -49,31 +49,31 @@ Genomenon, Genehancer and COSMIC. For viral genomes, any GISAID-sequences or any data derived from GISAID sequences cannot be shared by us. Please see the respective track documentation pages on these assemblies for more details, by selecting the assembly and clicking the track title in the genome browser. They usually list or link to the exact license conditions. Files for these tracks are not available from our download servers, please contact us for questions or if you need a pointer to the respective conversion scripts in our Github code repository.</p><br> <h1 id="free">Software: Most command-line tools and directories are freely available for all uses</h1> <p> The majority of the Genome Browser source code is available under the MIT license, see <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/LICENSE" target=_blank>the LICENSE file in our source code repository</a>. As such, the -<a href="https://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads"> +<a href="https://hgdownload.gi.ucsc.edu/downloads.html#utilities_downloads"> Unix command line utilities</a> needed to build tracks, track hub files, computational pipelines, and our hundreds of tools to filter, sort, rearrange, join, and process genome annotation files can be used and redistributed freely via package managers and installation tools, even for commercial use (except BLAT/LiftOver). Notable examples are bedToBigBed, wigToBigWig, overlapSelect, featureBits, pslMap, pslFilter and pslCDnaFilter. </p> <p> The exceptions are source code directories with special LICENSE files in them. These are <code>kent/src/blat</code>, <code>kent/src/isPcr</code>, <code>kent/src/jkOwnLib</code>, and the programs that produce the graphical images or user interface for the UCSC Genome Browser. This includes the following subdirectories under <code>kent/src/hg</code>: </p> @@ -191,26 +191,26 @@ <br> <h1>Acknowledgements</h1> <p> This software includes software made by open-source projects: <ul> <li> htslib, see <a href="https://doi.org/10.1093/gigascience/giab007" target=_blank> Bonfield et al, 2021</a>: Copyright (C) 2012-2020 Genome Research Ltd., see <code>kent/src/htslib</code></li> <li> optimalLeaf, see <a href="https://www.ncbi.nlm.nih.gov/pubmed/12801867" target=_blank> Bar-Joseph et al. 2003</a>: released into the public domain by Ziv Bar-Joseph, see <code>kent/src/optimalLeaf</code>.</li> <li> Portions of this software are copyright 2020 The FreeType Project (www.freetype.org). All rights reserved.</li> <li> This software uses the (URW)++ fonts, Copyright 1999 by (URW)++ Design & Development. The files are not in git but can be obtained via rsync or ftp from - hgdownload.soe.ucsc.edu/htdocs.</li> + hgdownload.gi.ucsc.edu/htdocs.</li> <li>MySQL connectivity is provided via the MariaDB C client library provided under LGPL. <a href="https://mariadb.com/kb/en/the-mariadb-library/mariadb-connector-c/">https://mariadb.com/kb/en/the-mariadb-library/mariadb-connector-c/</a></li> <li>It includes software developed by the OpenSSL Project for use in the OpenSSL Toolkit (http://www.openssl.org/). This product includes cryptographic software written by Eric Young (eay@cryptsoft.com). This product includes software written by Tim Hudson (tjh@cryptsoft.com).</li> <li>We use Font Awesome by Dave Gandy - http://fontawesome.io</li> <li><a href="https://www.flaticon.com/free-icons/genome" title="genome icons">Genome icons created by Kalashnyk - Flaticon</a></li> </ul> </p> <!--#include virtual="$ROOT/inc/gbPageEnd.html" -->