0abed78024d40b506c2b2e3a49ad483045bc5e1d mspeir Sat Aug 1 20:53:25 2026 -0700 singleCellSignalsPeaks: add native mm10 track mm10 counterpart of the hg38 track: 629 single-cell ATAC signal (bigWig) and peak (bigNarrowPeak) subtracks from 9 Cell Browser datasets, re-parented under one faceted composite in the regulation group. Colored by broad cell class from the same palette as hg38, grouped by class, off by default; cell types are paper-curated and the facets/longLabels are harmonized (see the makeDoc). Data lives in /hive/data/genomes/mm10/bed/singleCellSignalsPeaks and is served via the /gbdb/mm10/bbi symlink; the .ra is regenerated by makeSingleCellSignalsPeaksRa.py from the Cell Browser hub build. Included in mm10 trackDb.ra (alpha). refs #37914 Co-Authored-By: Claude Opus 4.8 (1M context) diff --git src/hg/makeDb/trackDb/mouse/mm10/singleCellSignalsPeaks.ra src/hg/makeDb/trackDb/mouse/mm10/singleCellSignalsPeaks.ra new file mode 100644 index 00000000000..38f5798ec49 --- /dev/null +++ src/hg/makeDb/trackDb/mouse/mm10/singleCellSignalsPeaks.ra @@ -0,0 +1,6864 @@ +track singleCellSignalsPeaks +compositeTrack faceted +group regulation +visibility hide +type bigBed 3 +shortLabel Single-cell ATAC-seq +longLabel Single-cell ATAC-seq Peaks and Signals for UCSC Cell Browser datasets +metaDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/singleCellSignalsPeaks_metadata.tsv +primaryKey Track +subtrackUrls Dataset=https://cells.ucsc.edu/?ds=$$ +defaultSortField Cell_class +maxCheckboxes 200 + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__dorsal +parent singleCellSignalsPeaks off +priority 200000 +type bigWig 0.000000 1283.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_dorsal_ventral/bw/dorsal-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel dorsal +longLabel Dorsal striatum medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__msn_d1_dorsal +parent singleCellSignalsPeaks off +priority 200001 +type bigWig 0.000000 1212.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_D1_D2_dorsal_ventral/bw/MSN_D1_dorsal-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel MSN_D1_dorsal +longLabel D1 medium spiny neuron (dorsal) (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__msn_d1 +parent singleCellSignalsPeaks off +priority 200002 +type bigWig 0.000000 1287.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_D1_D2/bw/MSN_D1-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel MSN_D1 +longLabel D1 medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__msn_d1_ventral +parent singleCellSignalsPeaks off +priority 200003 +type bigWig 0.000000 1356.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_D1_D2_dorsal_ventral/bw/MSN_D1_ventral-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel MSN_D1_ventral +longLabel D1 medium spiny neuron (ventral) (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__msn_d2_dorsal +parent singleCellSignalsPeaks off +priority 200004 +type bigWig 0.000000 1393.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_D1_D2_dorsal_ventral/bw/MSN_D2_dorsal-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel MSN_D2_dorsal +longLabel D2 medium spiny neuron (dorsal) (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__msn_d2 +parent singleCellSignalsPeaks off +priority 200005 +type bigWig 0.000000 1450.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_D1_D2/bw/MSN_D2-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel MSN_D2 +longLabel D2 medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__msn_d2_ventral +parent singleCellSignalsPeaks off +priority 200006 +type bigWig 0.000000 1469.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_D1_D2_dorsal_ventral/bw/MSN_D2_ventral-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel MSN_D2_ventral +longLabel D2 medium spiny neuron (ventral) (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__ventral +parent singleCellSignalsPeaks off +priority 200007 +type bigWig 0.000000 1363.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_dorsal_ventral/bw/ventral-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel ventral +longLabel Ventral striatum medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1039_samy_pal_chst9_1 +parent singleCellSignalsPeaks off +priority 100000 +type bigWig 0.000000 957.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_regrouping_cl/bw/X1039_sAMY_PAL_Chst9_1-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 213,94,0 +shortLabel X1039_sAMY_PAL_Chst9_1 +longLabel Chst9 GABAergic neuron (MSN-like) (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1039_samy_pal_chst9_1_2 +parent singleCellSignalsPeaks off +priority 100001 +type bigWig 0.000000 957.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_D1_D2/bw/X1039_sAMY_PAL_Chst9_1-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 213,94,0 +shortLabel X1039_sAMY_PAL_Chst9_1 +longLabel Chst9 GABAergic neuron (MSN-like) (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1039_samy_pal_chst9_1_3 +parent singleCellSignalsPeaks off +priority 100002 +type bigWig 0.000000 957.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_D1_D2_dorsal_ventral/bw/X1039_sAMY_PAL_Chst9_1-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 213,94,0 +shortLabel X1039_sAMY_PAL_Chst9_1 +longLabel Chst9 GABAergic neuron (MSN-like) (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1039_samy_pal_chst9_1_4 +parent singleCellSignalsPeaks off +priority 100003 +type bigWig 0.000000 957.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_dorsal_ventral/bw/X1039_sAMY_PAL_Chst9_1-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 213,94,0 +shortLabel X1039_sAMY_PAL_Chst9_1 +longLabel Chst9 GABAergic neuron (MSN-like) (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1040_samy_pal_chst9 +parent singleCellSignalsPeaks off +priority 100004 +type bigWig 0.000000 1012.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_regrouping_cl/bw/X1040_sAMY_PAL_Chst9-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 213,94,0 +shortLabel X1040_sAMY_PAL_Chst9 +longLabel Chst9 GABAergic neuron (MSN-like) (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1040_samy_pal_chst9_2 +parent singleCellSignalsPeaks off +priority 100005 +type bigWig 0.000000 985.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_D1_D2/bw/X1040_sAMY_PAL_Chst9-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 213,94,0 +shortLabel X1040_sAMY_PAL_Chst9 +longLabel Chst9 GABAergic neuron (MSN-like) (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1040_samy_pal_chst9_3 +parent singleCellSignalsPeaks off +priority 100006 +type bigWig 0.000000 1013.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_D1_D2_dorsal_ventral/bw/X1040_sAMY_PAL_Chst9-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 213,94,0 +shortLabel X1040_sAMY_PAL_Chst9 +longLabel Chst9 GABAergic neuron (MSN-like) (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1040_samy_pal_chst9_4 +parent singleCellSignalsPeaks off +priority 100007 +type bigWig 0.000000 994.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_dorsal_ventral/bw/X1040_sAMY_PAL_Chst9-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 213,94,0 +shortLabel X1040_sAMY_PAL_Chst9 +longLabel Chst9 GABAergic neuron (MSN-like) (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1061_msn_d1_outer +parent singleCellSignalsPeaks off +priority 200008 +type bigWig 0.000000 1366.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_regrouping_cl/bw/X1061_MSN_D1_outer-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel X1061_MSN_D1_outer +longLabel D1 medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1061_msn_d1_outer_2 +parent singleCellSignalsPeaks off +priority 200009 +type bigWig 0.000000 1327.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_D1_D2/bw/X1061_MSN_D1_outer-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel X1061_MSN_D1_outer +longLabel D1 medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1061_msn_d1_outer_3 +parent singleCellSignalsPeaks off +priority 200010 +type bigWig 0.000000 1395.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_D1_D2_dorsal_ventral/bw/X1061_MSN_D1_outer-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel X1061_MSN_D1_outer +longLabel D1 medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1061_msn_d1_outer_4 +parent singleCellSignalsPeaks off +priority 200011 +type bigWig 0.000000 1373.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_dorsal_ventral/bw/X1061_MSN_D1_outer-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel X1061_MSN_D1_outer +longLabel D1 medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1066_msn_d2 +parent singleCellSignalsPeaks off +priority 200012 +type bigWig 0.000000 1375.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_regrouping_cl/bw/X1066_MSN_D2-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel X1066_MSN_D2 +longLabel D2 medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1067_msn_d2_1 +parent singleCellSignalsPeaks off +priority 200013 +type bigWig 0.000000 1319.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_regrouping_cl/bw/X1067_MSN_D2_1-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel X1067_MSN_D2_1 +longLabel D2 medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1067_msn_d2_2 +parent singleCellSignalsPeaks off +priority 200014 +type bigWig 0.000000 1776.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_regrouping_cl/bw/X1067_MSN_D2_2-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel X1067_MSN_D2_2 +longLabel D2 medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1080_msn_d2 +parent singleCellSignalsPeaks off +priority 200015 +type bigWig 0.000000 1765.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_regrouping_cl/bw/X1080_MSN_D2-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel X1080_MSN_D2 +longLabel D2 medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1081_msn_d2 +parent singleCellSignalsPeaks off +priority 200016 +type bigWig 0.000000 1412.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_regrouping_cl/bw/X1081_MSN_D2-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel X1081_MSN_D2 +longLabel D2 medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1091_msn_d1 +parent singleCellSignalsPeaks off +priority 200017 +type bigWig 0.000000 873.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_regrouping_cl/bw/X1091_MSN_D1-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel X1091_MSN_D1 +longLabel D1 medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1099_msn_d1 +parent singleCellSignalsPeaks off +priority 200018 +type bigWig 0.000000 1385.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_regrouping_cl/bw/X1099_MSN_D1-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel X1099_MSN_D1 +longLabel D1 medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1106_msn_d1 +parent singleCellSignalsPeaks off +priority 200019 +type bigWig 0.000000 1122.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_regrouping_cl/bw/X1106_MSN_D1-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel X1106_MSN_D1 +longLabel D1 medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1116_msn_d1 +parent singleCellSignalsPeaks off +priority 200020 +type bigWig 0.000000 1028.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_regrouping_cl/bw/X1116_MSN_D1-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel X1116_MSN_D1 +longLabel D1 medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1117_msn_d1 +parent singleCellSignalsPeaks off +priority 200021 +type bigWig 0.000000 1586.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_regrouping_cl/bw/X1117_MSN_D1-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel X1117_MSN_D1 +longLabel D1 medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1122_msn_d1 +parent singleCellSignalsPeaks off +priority 200022 +type bigWig 0.000000 1818.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_regrouping_cl/bw/X1122_MSN_D1-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 230,159,0 +shortLabel X1122_MSN_D1 +longLabel D1 medium spiny neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1126_hy_pal_str_folh1_1 +parent singleCellSignalsPeaks off +priority 100008 +type bigWig 0.000000 1613.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_regrouping_cl/bw/X1126_HY_PAL_STR_Folh1_1-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 213,94,0 +shortLabel X1126_HY_PAL_STR_Folh1_1 +longLabel Folh1 GABAergic neuron (D3 MSN-like) (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1126_hy_pal_str_folh1_1_2 +parent singleCellSignalsPeaks off +priority 100009 +type bigWig 0.000000 1621.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_D1_D2/bw/X1126_HY_PAL_STR_Folh1_1-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 213,94,0 +shortLabel X1126_HY_PAL_STR_Folh1_1 +longLabel Folh1 GABAergic neuron (D3 MSN-like) (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1126_hy_pal_str_folh1_1_3 +parent singleCellSignalsPeaks off +priority 100010 +type bigWig 0.000000 1582.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_D1_D2_dorsal_ventral/bw/X1126_HY_PAL_STR_Folh1_1-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 213,94,0 +shortLabel X1126_HY_PAL_STR_Folh1_1 +longLabel Folh1 GABAergic neuron (D3 MSN-like) (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1126_hy_pal_str_folh1_1_4 +parent singleCellSignalsPeaks off +priority 100011 +type bigWig 0.000000 1646.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_merge_dorsal_ventral/bw/X1126_HY_PAL_STR_Folh1_1-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 213,94,0 +shortLabel X1126_HY_PAL_STR_Folh1_1 +longLabel Folh1 GABAergic neuron (D3 MSN-like) (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1728_pal_sln +parent singleCellSignalsPeaks off +priority 100012 +type bigWig 0.000000 133.000000 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/allen-brain-science/bg_regrouping_cl/bw/X1728_PAL_Sln-TileSize-1-normMethod-ReadsInTSS-ArchR.bw +autoScale on +maxHeightPixels 100:30:8 +color 213,94,0 +shortLabel X1728_PAL_Sln +longLabel Sln pallidal GABAergic neuron (Allen Basal Ganglia ATAC) + +track singleCellSignalsPeaks_allen_basal_ganglia_atac__x1728_pal_sln_2 +parent singleCellSignalsPeaks off +priority 100013 +type bigWig 0.000000 133.000000 +bigDataUrl 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Oligodendrocyte (CATLAS Adult Mouse Brain Paired-Tag) + +track singleCellSignalsPeaks_catlas_paired_tag__opc_atac +parent singleCellSignalsPeaks off +priority 700012 +type bigWig 0.000000 169.938004 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/catlas-decoder/catlas_pairedTag/bw/OPC.ATAC.bw +autoScale on +maxHeightPixels 100:30:8 +color 240,228,66 +shortLabel OPC +longLabel Oligodendrocyte precursor cell (CATLAS Adult Mouse Brain Paired-Tag) + +track singleCellSignalsPeaks_mouse_epi_juv_brain__ast_nt +parent singleCellSignalsPeaks off +priority 500027 +type bigWig +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-epi-juv-brain/hub/atac/AST_NT.bw +color 0,158,115 +shortLabel AST_NT +longLabel Astrocyte (Multimodal Chromatin Profiling of Juvenile Mouse Brain) + +track singleCellSignalsPeaks_mouse_epi_juv_brain__ast_te +parent singleCellSignalsPeaks off +priority 500028 +type bigWig +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-epi-juv-brain/hub/atac/AST_TE.bw +color 0,158,115 +shortLabel AST_TE +longLabel Astrocyte (Multimodal Chromatin Profiling of Juvenile Mouse Brain) + +track singleCellSignalsPeaks_mouse_epi_juv_brain__bg +parent singleCellSignalsPeaks off +priority 500029 +type bigWig +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-epi-juv-brain/hub/atac/BG.bw +color 0,158,115 +shortLabel BG +longLabel Bergmann glia (Multimodal Chromatin Profiling of Juvenile Mouse Brain) + +track singleCellSignalsPeaks_mouse_epi_juv_brain__chp_epe +parent singleCellSignalsPeaks off +priority 900001 +type bigWig +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-epi-juv-brain/hub/atac/CHP-EPE.bw +color 68,170,153 +shortLabel CHP-EPE +longLabel Choroid plexus / ependymal (Multimodal Chromatin Profiling of Juvenile Mouse Brain) + +track singleCellSignalsPeaks_mouse_epi_juv_brain__exc1 +parent singleCellSignalsPeaks off +priority 121 +type bigWig +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-epi-juv-brain/hub/atac/EXC1.bw +color 0,114,178 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INH3 +longLabel Inhibitory neuron (Multimodal Chromatin Profiling of Juvenile Mouse Brain) + +track singleCellSignalsPeaks_mouse_epi_juv_brain__mgl +parent singleCellSignalsPeaks off +priority 800012 +type bigWig +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-epi-juv-brain/hub/atac/MGL.bw +color 0,0,0 +shortLabel MGL +longLabel Microglia (Multimodal Chromatin Profiling of Juvenile Mouse Brain) + +track singleCellSignalsPeaks_mouse_epi_juv_brain__mol +parent singleCellSignalsPeaks off +priority 600023 +type bigWig +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-epi-juv-brain/hub/atac/MOL.bw +color 204,121,167 +shortLabel MOL +longLabel Oligodendrocyte (Multimodal Chromatin Profiling of Juvenile Mouse Brain) + +track singleCellSignalsPeaks_mouse_epi_juv_brain__oec +parent singleCellSignalsPeaks off +priority 2000000 +type bigWig +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-epi-juv-brain/hub/atac/OEC.bw +color 153,153,153 +shortLabel OEC +longLabel Olfactory ensheathing cell (Multimodal Chromatin Profiling of Juvenile Mouse Brain) + +track singleCellSignalsPeaks_mouse_epi_juv_brain__opc +parent singleCellSignalsPeaks off +priority 700013 +type bigWig +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-epi-juv-brain/hub/atac/OPC.bw +color 240,228,66 +shortLabel OPC +longLabel Oligodendrocyte precursor cell (Multimodal Chromatin Profiling of Juvenile Mouse Brain) + +track singleCellSignalsPeaks_mouse_epi_juv_brain__rgc +parent singleCellSignalsPeaks off +priority 400007 +type bigWig +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-epi-juv-brain/hub/atac/RGC.bw +color 51,34,136 +shortLabel RGC +longLabel Radial glia (Multimodal Chromatin Profiling of Juvenile Mouse Brain) + +track singleCellSignalsPeaks_mouse_epi_juv_brain__vec +parent singleCellSignalsPeaks off +priority 1100024 +type bigWig +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-epi-juv-brain/hub/atac/VEC.bw +color 136,204,238 +shortLabel VEC +longLabel Endothelial cell (Multimodal Chromatin Profiling of Juvenile Mouse Brain) + +track singleCellSignalsPeaks_mouse_epi_juv_brain__vlmc +parent singleCellSignalsPeaks off +priority 1200027 +type bigWig +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-epi-juv-brain/hub/atac/VLMC.bw +color 221,204,119 +shortLabel VLMC +longLabel Vascular leptomeningeal cell (Multimodal Chromatin Profiling of Juvenile Mouse Brain) + +track singleCellSignalsPeaks_mouse_kidney_atac__sc_atac_seq_cnt +parent singleCellSignalsPeaks off +priority 1800003 +type bigWig 0.000000 155.302200 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-kidney-atac/bigWig/sc-atac-seq/CNT.bw +autoScale group +color 17,119,51 +shortLabel CNT +longLabel Connecting tubule cell, kidney (Mouse Kidney Regulatory Landscape) + +track singleCellSignalsPeaks_mouse_kidney_atac__sc_atac_seq_dct +parent singleCellSignalsPeaks off +priority 1800004 +type bigWig 0.000000 171.155487 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-kidney-atac/bigWig/sc-atac-seq/DCT.bw +autoScale group +color 17,119,51 +shortLabel DCT +longLabel Distal convoluted tubule cell, kidney (Mouse Kidney Regulatory Landscape) + +track singleCellSignalsPeaks_mouse_kidney_atac__sc_atac_seq_endo +parent singleCellSignalsPeaks off +priority 1100025 +type bigWig 0.000000 175.404663 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-kidney-atac/bigWig/sc-atac-seq/Endo.bw +autoScale group +color 136,204,238 +shortLabel Endo +longLabel Endothelial cell, kidney (Mouse Kidney Regulatory Landscape) + +track singleCellSignalsPeaks_mouse_kidney_atac__sc_atac_seq_ic +parent singleCellSignalsPeaks off +priority 1800005 +type bigWig 0.000000 147.930664 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-kidney-atac/bigWig/sc-atac-seq/IC.bw +autoScale group +color 17,119,51 +shortLabel IC +longLabel Collecting duct intercalated cell, kidney (Mouse Kidney Regulatory Landscape) + +track singleCellSignalsPeaks_mouse_kidney_atac__sc_atac_seq_immune +parent singleCellSignalsPeaks off +priority 1300055 +type bigWig 0.000000 165.545349 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-kidney-atac/bigWig/sc-atac-seq/immune.bw +autoScale group +color 238,102,119 +shortLabel Immune +longLabel Immune cell, kidney (Mouse Kidney Regulatory Landscape) + +track singleCellSignalsPeaks_mouse_kidney_atac__sc_atac_seq_loh +parent singleCellSignalsPeaks off +priority 1800006 +type bigWig 0.000000 123.698120 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-kidney-atac/bigWig/sc-atac-seq/LOH.bw +autoScale group +color 17,119,51 +shortLabel LOH +longLabel Loop of Henle cell, kidney (Mouse Kidney Regulatory Landscape) + +track singleCellSignalsPeaks_mouse_kidney_atac__sc_atac_seq_new_stroma1 +parent singleCellSignalsPeaks off +priority 1900015 +type bigWig 0.000000 120.463509 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-kidney-atac/bigWig/sc-atac-seq/new_stroma1.bw 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bigWig 0.000000 140.261017 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-kidney-atac/bigWig/sc-atac-seq/PC.bw +autoScale group +color 17,119,51 +shortLabel PC +longLabel Collecting duct principal cell, kidney (Mouse Kidney Regulatory Landscape) + +track singleCellSignalsPeaks_mouse_kidney_atac__sc_atac_seq_podo +parent singleCellSignalsPeaks off +priority 1800008 +type bigWig 0.000000 173.274048 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-kidney-atac/bigWig/sc-atac-seq/Podo.bw +autoScale group +color 17,119,51 +shortLabel Podo +longLabel Podocyte, kidney (Mouse Kidney Regulatory Landscape) + +track singleCellSignalsPeaks_mouse_kidney_atac__sc_atac_seq_pt +parent singleCellSignalsPeaks off +priority 1800009 +type bigWig 0.000000 234.266617 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-kidney-atac/bigWig/sc-atac-seq/PT.bw +autoScale group +color 17,119,51 +shortLabel PT1 +longLabel Proximal tubule cell, kidney (Mouse Kidney Regulatory Landscape) + +track singleCellSignalsPeaks_mouse_kidney_atac__sc_atac_seq_pt2 +parent singleCellSignalsPeaks off +priority 1800010 +type bigWig 0.000000 326.866241 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-kidney-atac/bigWig/sc-atac-seq/PT2.bw +autoScale group +color 17,119,51 +shortLabel PT2 +longLabel Proximal tubule, kidney (Mouse Kidney Regulatory Landscape) + +track singleCellSignalsPeaks_mouse_lvcp_multiome__scmultiome__all_endothelial_cells +parent singleCellSignalsPeaks off +priority 1100026 +type bigWig 0.000000 30486.400391 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-lvcp-multiome/scMultiome/atac/hub/signal/endothelial/endothelial_cells.bw +autoScale group +color 136,204,238 +shortLabel All Endothelial Cells +longLabel Endothelial cell, choroid plexus (Mouse Lateral Ventricle Choroid Plexus Multi-omics) + +track singleCellSignalsPeaks_mouse_lvcp_multiome__scmultiome__all_epithelial_cells +parent singleCellSignalsPeaks off +priority 1800011 +type bigWig 0.000000 30486.400391 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-lvcp-multiome/scMultiome/atac/hub/signal/epithelial/epithelial_cells.bw +autoScale group +color 17,119,51 +shortLabel All Epithelial Cells +longLabel Epithelial cell, choroid plexus (Mouse Lateral Ventricle Choroid Plexus Multi-omics) + +track singleCellSignalsPeaks_mouse_lvcp_multiome__scmultiome__all_immune_cells +parent singleCellSignalsPeaks off +priority 1300056 +type bigWig 0.000000 30486.400391 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-lvcp-multiome/scMultiome/atac/hub/signal/immune/immune_cells.bw +autoScale group +color 238,102,119 +shortLabel All Immune Cells +longLabel All immune cells, choroid plexus (Mouse Lateral Ventricle Choroid Plexus Multi-omics) + +track singleCellSignalsPeaks_mouse_lvcp_multiome__scmultiome__all_mesenchymal_cells +parent singleCellSignalsPeaks off +priority 1900017 +type bigWig 0.000000 30486.400391 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-lvcp-multiome/scMultiome/atac/hub/signal/mesenchymal/mesenchymal_cells.bw +autoScale group +color 153,79,0 +shortLabel All Mesenchymal Cells +longLabel All mesenchymal cells, choroid plexus (Mouse Lateral Ventricle Choroid Plexus Multi-omics) + +track singleCellSignalsPeaks_mouse_lvcp_multiome__scmultiome__endothelial_artery +parent singleCellSignalsPeaks off +priority 1100027 +type bigWig 0.000000 12734.400391 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-lvcp-multiome/scMultiome/atac/hub/signal/endothelial/artery.bw +autoScale group +color 136,204,238 +shortLabel Artery +longLabel Arterial endothelial cell, choroid plexus (Mouse Lateral Ventricle Choroid Plexus Multi-omics) + +track singleCellSignalsPeaks_mouse_lvcp_multiome__scmultiome__endothelial_capillary +parent singleCellSignalsPeaks off +priority 1100028 +type bigWig 0.000000 12734.400391 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-lvcp-multiome/scMultiome/atac/hub/signal/endothelial/capillary.bw +autoScale group +color 136,204,238 +shortLabel Capillary +longLabel Capillary endothelial cell, choroid plexus (Mouse Lateral Ventricle Choroid Plexus Multi-omics) + +track singleCellSignalsPeaks_mouse_lvcp_multiome__scmultiome__endothelial_proliferating_endothelial_cells +parent singleCellSignalsPeaks off +priority 1100029 +type bigWig 0.000000 12734.400391 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-lvcp-multiome/scMultiome/atac/hub/signal/endothelial/proliferating_endothelial_cells.bw +autoScale group +color 136,204,238 +shortLabel Proliferating Endothelial Cells +longLabel Endothelial cell, choroid plexus (Mouse Lateral Ventricle Choroid Plexus Multi-omics) + +track singleCellSignalsPeaks_mouse_lvcp_multiome__scmultiome__endothelial_vein +parent singleCellSignalsPeaks off +priority 1100030 +type bigWig 0.000000 12734.400391 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-lvcp-multiome/scMultiome/atac/hub/signal/endothelial/vein.bw +autoScale group +color 136,204,238 +shortLabel Vein +longLabel Venous endothelial cell, choroid plexus (Mouse Lateral Ventricle Choroid Plexus Multi-omics) + +track singleCellSignalsPeaks_mouse_lvcp_multiome__scmultiome__epithelial_ciliogenesis +parent singleCellSignalsPeaks off +priority 1800012 +type bigWig 0.000000 32240.400391 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-lvcp-multiome/scMultiome/atac/hub/signal/epithelial/ciliogenesis.bw +autoScale group +color 17,119,51 +shortLabel Ciliogenesis +longLabel Ciliated epithelial cell, choroid plexus (Mouse Lateral Ventricle Choroid Plexus Multi-omics) + +track singleCellSignalsPeaks_mouse_lvcp_multiome__scmultiome__epithelial_epithelial_cells_gata3 +parent singleCellSignalsPeaks off +priority 1800013 +type bigWig 0.000000 32240.400391 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-lvcp-multiome/scMultiome/atac/hub/signal/epithelial/epithelial_cells_gata3+.bw +autoScale group +color 17,119,51 +shortLabel Epithelial Cells Gata3+ +longLabel Epithelial cell, choroid plexus (Mouse Lateral Ventricle Choroid Plexus Multi-omics) + +track singleCellSignalsPeaks_mouse_lvcp_multiome__scmultiome__epithelial_proliferating_epithelial_cells +parent singleCellSignalsPeaks off +priority 1800014 +type bigWig 0.000000 32240.400391 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-lvcp-multiome/scMultiome/atac/hub/signal/epithelial/proliferating_epithelial_cells.bw +autoScale group +color 17,119,51 +shortLabel Proliferating Epithelial Cells +longLabel Epithelial cell, choroid plexus (Mouse Lateral Ventricle Choroid Plexus Multi-omics) + +track singleCellSignalsPeaks_mouse_lvcp_multiome__scmultiome__immune_lymphocytes +parent singleCellSignalsPeaks off +priority 1300057 +type bigWig 0.000000 10731.299805 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-lvcp-multiome/scMultiome/atac/hub/signal/immune/lymphocytes.bw +autoScale group +color 238,102,119 +shortLabel Lymphocytes +longLabel Lymphocyte, choroid plexus (Mouse Lateral Ventricle Choroid Plexus Multi-omics) + +track singleCellSignalsPeaks_mouse_lvcp_multiome__scmultiome__immune_macrophages +parent singleCellSignalsPeaks off +priority 1300058 +type bigWig 0.000000 10731.299805 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-lvcp-multiome/scMultiome/atac/hub/signal/immune/macrophages.bw +autoScale group +color 238,102,119 +shortLabel Macropahges +longLabel Macrophage, choroid plexus (Mouse Lateral Ventricle Choroid Plexus Multi-omics) + +track singleCellSignalsPeaks_mouse_lvcp_multiome__scmultiome__mesenchymal_fibroblasts +parent singleCellSignalsPeaks off +priority 1900018 +type bigWig 0.000000 10759.299805 +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-lvcp-multiome/scMultiome/atac/hub/signal/mesenchymal/fibroblasts.bw 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+qValueFilter 5.26 +qValueFilterLimits 0:73 +color 153,153,153 +shortLabel All Cells +longLabel All cells, choroid plexus (Mouse Lateral Ventricle Choroid Plexus Multi-omics) + +track singleCellSignalsPeaks_mouse_lvcp_multiome__scmultiome__peaks_endothelial_cells +parent singleCellSignalsPeaks off +priority 1100031 +type bigNarrowPeak +bigDataUrl /gbdb/mm10/bbi/singleCellSignalsPeaks/mouse-lvcp-multiome/scMultiome/atac/hub/peaks/endothelial_cells.bb +useScore 1 +maxHeightPixels 100:60:8 +signalFilter 1.90 +signalFilterLimits 0:7 +pValueFilter 7.14 +pValueFilterLimits 0:83 +qValueFilter 5.26 +qValueFilterLimits 0:73 +color 136,204,238 +shortLabel Endothelial Cells +longLabel Endothelial cell, choroid plexus (Mouse Lateral Ventricle Choroid Plexus Multi-omics) + +track singleCellSignalsPeaks_mouse_lvcp_multiome__scmultiome__peaks_epithelial_cells +parent singleCellSignalsPeaks off +priority 1800015 +type bigNarrowPeak +bigDataUrl 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